Atri018423.2
Basic Information
- Insect
- Abrostola triplasia
- Gene Symbol
- -
- Assembly
- GCA_946251925.1
- Location
- CAMIUJ010000158.1:2225209-2232444[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-12 1.8e-09 37.3 0.0 4 39 176 212 173 216 0.90 2 4 3.4e-11 2.5e-08 33.6 0.3 2 39 228 265 227 269 0.92 3 4 4.1e-15 3e-12 46.2 0.2 2 45 283 327 282 327 0.96 4 4 3.2e-18 2.3e-15 56.1 0.1 1 42 334 376 334 378 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGAGTCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTTGCTCACAGTTATCTAGCCAGTCAGCTTTCTTCAGAATTTCGTCAAGTGAAATTCGAATTGGCGCGAAATAATGAAGGCCGCGTTCCGACCATACTACACGACTTGCAGGGTGGTGGGCTGGAAGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCTGTGTGCGTCAAGCAGGAGCGGGCCGACTCCCCGCCCGCCGCCACTCTTGAGACGCTGGAGCCGGCGCTGCATACTGCTAAGAGCACATGCCTACTGGACCGGCACATGGAGTTCATGCAGGTGTGCGACACGCCAGACTCCACGGACTTCATGCCTCTGCTGGCTGTTAAGGATGAACCCTCGTCTGAGGGAGAGCAACCGCACCTGAGTGGCGAGGACACGAGCGACTCGTGTGGCCGCCAGGCGTCGCCCGCGCCCCGACACAGCCCGAAGAGCTGGACGCAGCACGACATGGAGAGGGCCCTGGACGCGCTGCGGAACCATCAGATGAGCCTCACTAAGGCGTCAGCAACGTACGGCATACCGTCCACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGTGAGGCCGACCTGCGCGGGGCCCTGCATGCGCTCAGGGCTGGCGCTATATCGGCTAACAAGGCCAGCAAAGCTTACGGCATCCCAAGCAGCACGCTGTACAAGATAGCGCGTCGCGAGGGCATCCGTCTGTCGGCGCCGTTCAACGCGGCCCCCACCGCGTGGCGGCGCGCCGACCTCGCGCATGCGCTGGCCGCCATCCGCGCGGGCGCCTCCTCCGTGCAGCGCGCCGCCACCACCTACGGGATCCCCACCGGCACGCTGTACGGGCGGTGCAAGCGGGAGGGCATCGAGCTGTCCCGCTCCAACCCCACGCCCTGGTCCGAGGACGCCATGGGAGAAGCTCTTGAGGCTGTCAGAGTGGGACAGATGTCTATAAACCAGGCTGCCATCTACTACAACCTGCCGTACTCCTCGCTCTACGGACGATTCAAGAGGTGCAAATATCAAATGCAGGGCGTCCCACAAAACCAGCAACAGCCACAAACTGACTTCAAATTGGACGAGCACCAGGCTCACGAGGTCCAGCAGTACTACCACCAGGTGCCCCACCACATGGAACACGAGTCGCACTCATACTCACACATGCACGACTACTCACACGCACACTCGCACGACCAGTACGGACAGTACTACCAGACCTTTAACGGCATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLASQLSSEFRQVKFELARNNEGRVPTILHDLQGGGLEELAPLAPAGPAATPVCVKQERADSPPAATLETLEPALHTAKSTCLLDRHMEFMQVCDTPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLAHALAAIRAGASSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIYYNLPYSSLYGRFKRCKYQMQGVPQNQQQPQTDFKLDEHQAHEVQQYYHQVPHHMEHESHSYSHMHDYSHAHSHDQYGQYYQTFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_00000234;
- 80% Identity
- -