Mlor004442.1
Basic Information
- Insect
- Mythimna loreyi
- Gene Symbol
- -
- Assembly
- GCA_029852875.1
- Location
- CM056780.1:20662579-20676220[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-12 2.3e-09 37.6 0.0 4 39 148 184 145 188 0.89 2 4 7.2e-11 3.9e-08 33.7 0.3 2 39 200 237 199 241 0.92 3 4 3.2e-14 1.7e-11 44.5 0.0 2 45 255 299 254 299 0.96 4 4 4.1e-18 2.2e-15 56.9 0.1 1 43 306 349 306 351 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGCCTGTCACAAGTGAAGTGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAGTTCACGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCGGTGTGTGTTAAACAGGAGCGCGCTGAGTCCCCACCAGCGACCACGTTGGAGACACTCGAGTCGGCTCCTCATAATGCCAAGAGCACATCGCTGCTGGATCGTCACATAGACTTTATGAACGTCACCGAAGTGCCTGACTCCACCGACTTCATGCCGCTGCTGACTGTCAAGGATGAACCCTCGTCCGAAGGTGAGCAACCACATCTTAGCGGTGAAGACACAAGCGACTCCTGCGGGCGTCAAGCGTCGCCGGCGCCGCGGCACAGCCCCAAGAGCTGGACCCAGCAGGACATGGAGCGCGCCTTGGACGCTCTCAGAAACCACCAGATGAGCCTTACAAAGGCATCAGCGACATACGGCATTCCGTCCACTACGCTTTGGCAGCGCGCGCATCGCCTGGGCATCGACACGCCCAAGAAGGAAGGCGCTGCCAAGTCCTGGAGCGAAGCGGACCTGCGGGGAGCACTGCATGCGCTCAGGGCAGGCGCTATCTCCGCTAACAAGGCTAGCAAGGCTTATGGCATCCCTAGCAGCACACTGTACAAGATAGCTCGGCGCGAGGGCATCCGGCTTTCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCTCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCTGCCACGCAGTATGGGATACCTACAGGAACGTTGTATGGTCGGTGTAAGCGCGAGGGCATCGAGCTGTCTCGCTCTAATCCAACTCCGTGGTCAGAAGACGCCATGGGAGAAGCGCTTGAAGCTGTCAGAGTGGGGCAGATGTCCATCAACCAGGCGGCGATCCATTACAACCTGCCTTACTCCTCTCTCTACGGGAGGTTCAAGAGGTGCAAATATCAAATGCAGGCTGTCCCACAAAATCAACAGCAACCACAGCAAGACCCCCACAAAGTCGAGCAAGAGCATCACCCCCACGAGCTGCAGCAGTACTACCATCAACTGCCGCCCCACCAGGAGTCGGACGCACACACATACTCCCACATGCACGACTATACTCACCAGGACCAGTACGCGCAGTACTACCAGGGCTTCAACAGCATAGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFTHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSLLDRHIDFMNVTEVPDSTDFMPLLTVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQAVPQNQQQPQQDPHKVEQEHHPHELQQYYHQLPPHQESDAHTYSHMHDYTHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -