Sver008781.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387293.1:678525-691816[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-12 1.8e-09 37.4 0.0 4 39 148 184 145 188 0.90 2 4 7.8e-12 5e-09 36.0 0.2 1 39 199 237 199 241 0.94 3 4 1.9e-14 1.2e-11 44.4 0.1 2 45 255 299 254 299 0.96 4 4 2.5e-18 1.6e-15 56.8 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGACTGTCTCGGGTGAAATGCGAACCGCTCTCGGACGAGGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGTAGTGGGCTCGAGGAGCTGGCCCCGCTCGCACCGGCGGGCCCGGCAGCCACGCCGGTGTGCGTCAAGCAGGAACGTGCTGACTCCCCGCCCGCTACCACTCTTGAGACACTCGAGTCAGCACCGCATTATGTTAAGAGCACGGTACTGCTGGATCGGCACATGGAGTTTATGAATGTGAGTGAAGGACCTGACTCCACAGACTTCATGCCGCTACTGGCTGTCAAAGATGAACCCTCGTCTGAAGGCGAGTTACCGCATCTAAGTGGCGAAGACACAAGCGATTCATGTGGTCGGCAAGCTTCGCCTGCGCCACGACACAGTCCCAAGAGTTGGACTCAGCACGACATGGAACGAGCACTGGATGCCCTTCGAAACCATCAGATGAGCCTCACCAAGGCATCAGCCACCTACGGTATACCGTCCACCACCCTCTGGCAGCGAGCGCACCGACTGGGCATCGATACGCCCAAGAAGGAAGGCGCTGCCAAGTCCTGGAGCGAAGAGGATTTGCGAGGAGCATTACACGCGTTAAGAGCAGGTGCTATATCAGCCAACAAGGCCAGCAAGGCTTACGGCATACCGAGCAGCACACTATACAAGATCGCGCGGCGCGAGGGCATCCGTCTGTCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTACATCTGGCGCTGGCCGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCACGCAGTACGGGATACCTACCGGCACGCTGTACGGGCGCTGCAAGCGGGAAGGTATCGAGCTGTCGCGCTCAAACCCTACCCCCTGGTCCGAGGACGCCATGGGAGAAGCGCTCGAAGCTGTTAGAGTGGGTCAGATGTCCATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTGTACGGCAGGTTCAAGAGGTGCAAGTATCAAATGCAGGGTGCCTCCCACAACCCTCAACAGCCCCAGCAAGACCTTCCGAAGGTGGAACACGAGCACCACACCAACGACATCCAACAGTACTACCAGCAGCAACCATCACACCACGAGGACCCTCACACATACACGCACATGCACGACTACTCACACACACATACACACGACCAGTACGGACAGTACTATCAGAGTTTCAACAGTATTGCGACGAGCTGA
- Protein Sequence
- MPGYGLSRVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERADSPPATTLETLESAPHYVKSTVLLDRHMEFMNVSEGPDSTDFMPLLAVKDEPSSEGELPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEEDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLHLALAAIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGASHNPQQPQQDLPKVEHEHHTNDIQQYYQQQPSHHEDPHTYTHMHDYSHTHTHDQYGQYYQSFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_00049821;
- 80% Identity
- -