Lfle023353.1
Basic Information
- Insect
- Laspeyria flexula
- Gene Symbol
- -
- Assembly
- GCA_905147015.1
- Location
- LR989961.1:686578-697591[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.9e-12 1.9e-09 37.5 0.0 4 39 176 212 173 216 0.89 2 4 4.7e-11 3.1e-08 33.6 0.3 2 39 228 265 227 269 0.92 3 4 6.4e-15 4.2e-12 46.0 0.1 2 45 283 327 282 327 0.96 4 4 3.1e-18 2e-15 56.6 0.0 1 42 334 376 334 378 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGTCTATCACAAGTGAAATGCGAGCCCCCGTCGGATGAAGACGATAGTAACTCACAATTCGCACACAGTTATCTAACTGGTCAGTTAACTTCACCTGTCCATCCAGTCAAATTAGAATCTCCACGGAGTTGTGATGATAGTGTTTCAACGAATTTACTTCGAGACCTTCAGGGTAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCGGTGTGCGTCAAGCAGGAGCGCGCCTCTCCACCCGCTGCCACTCTTGAAACTCTGGAGTCAGCACCGCATCACGCCAAGAGTACGTCACTGCTGGATCGGCACAGGTCGATAGTGAACGTGAACGAAGTGCCCGATTCTACGGATTTCATGCCGCTCCTGTCTGTCAAGGATGAGCCCTCGTCTGAAGGTGAACAACCACACCTGAGCGGAGAAGACACGAGTGACTCGTGTGGTCGGCAGACGTCGCCCGCGCCGCGCCACAGTCCCAAGAGTTGGACGCAACAGGACATGGAGCGAGCGCTCGACGCGCTCCGGAACCACCAGATGAGTCTTACCAAGGCATCGGCTACATACGGCATTCCGTCAACAACACTCTGGCAGCGAGCTCATAGACTGGGTATAGACACACCGAAGAAGGAGGGCTCCGCTAAGTCATGGAGCGAGGCTGACCTACGCGGGGCATTACATGCACTGAGAGCAGGTGCTATATCTGCTAATAAGGCTAGCAAAGCTTATGGTATTCCGAGCAGCACGCTGTACAAGATAGCTCGTCGCGAGGGCATCCGCCTGTCCGCGCCGTTCAACGCGGCGCCGACCGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTCGCCGCCATCCGCGCCGGCCGCAGCTCCGTGCAGCGCGCCGCCTCCACCTACGGGATACCCACGGGGACACTGTACGGTCGATGTAAGCGTGAAGGTATCGAGCTCTCTCGGTCCAACCCCACACCGTGGTCTGAGGATGCCATGGGCGAAGCTCTTGAAGCCGTCAGAGTGGGTCAAATGTCCATAAACCAGGCAGCGATACACTACAATCTACCGTACTCGTCGCTGTACGGCAGGTTCAAGAGGTGCCGGTACCAGATGCAGGTAATCCCCCAAAACCAGCAACAGCCACAAAACCTTCAAAAGACAGAAATGGACCCCCAACAACACGAGATGAACTACTACAGCCAAGTGCCCCCACACGAGCAGGACGGCCACACGTACTCACACATGGCCGAGTATCACCACGACACACACATGCACGATCAGTACGGACAGTACTACCAGTCGTTCAACAGCATAGCCACTAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPPSDEDDSNSQFAHSYLTGQLTSPVHPVKLESPRSCDDSVSTNLLRDLQGSGLEELAPLAPAGPAATPVCVKQERASPPAATLETLESAPHHAKSTSLLDRHRSIVNVNEVPDSTDFMPLLSVKDEPSSEGEQPHLSGEDTSDSCGRQTSPAPRHSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRAGRSSVQRAASTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCRYQMQVIPQNQQQPQNLQKTEMDPQQHEMNYYSQVPPHEQDGHTYSHMAEYHHDTHMHDQYGQYYQSFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- -
- 80% Identity
- -