Cmes017703.1
Basic Information
- Insect
- Cybosia mesomella
- Gene Symbol
- -
- Assembly
- GCA_946251875.1
- Location
- CAMIUH010000522.1:203689-220216[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.3e-11 1.5e-08 36.1 0.0 4 39 147 183 144 187 0.89 2 4 4.4e-10 1.3e-07 33.2 0.2 3 39 200 236 198 239 0.91 3 4 2.9e-14 8.3e-12 46.6 0.2 2 45 254 298 253 298 0.96 4 4 5e-17 1.5e-14 55.4 0.0 1 42 305 347 305 349 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCTCAGGTGAAATGCGAGCCGCTGTCTGACGAAGAGGATAGCAACTCACAGTTCGCGCACAATTATCTATCTGGTCAGGGCAGCGGTCTGGAGGAACTGGCACCGCTGGCGCCGGCGGGGCCTGCCGCCACGCCCGTGTGCGTCAAACAGGAACGAGCCTCTCCTCCAGCAGTAATGTTGGAGACTCTCGAGCCAGCACCGCATCATGCTAAGAGCTCGTCGCTATTGGGCCGACACTTAACAATAATGAATGGGAATGAAGTGCCGGATTCGAGTGATTTCGTACCACTGTTAGCTGTCAAAGATGAACCCTCACCTGAAGGAGAACAGCCTCACCTCAGCGGTGAAGATACGAGCGACTCCTGTGGTAGACAACTATCACCGATACTTCGGACCAGCCCCAAGAATTGGACGCAACAAGACATGGAACGAGCACTGGATGCTCTTCGGAAACACCAGATGAGTCTCACGAAGGCATCGGCAACTTACGGGATCCCTTCGACAACGCTGTGGCAGCGCGCGCACCGTCTGGGCATCGACACGCCGAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGACGCCGACCTGCGGGGAGCCCTGCACGCGCTGAGGGCCGGGGCTATATCCGCCAACAAGGCCAGCAAGGCTTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCCTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGGCGCGCGCGCTGGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCCACCTACGGCATCCCCACCGGAACGCTGTACGGGCGCTGTAAGCGCGAAGGAATCGAGCTGTCACGCTCCAACCCCACGCCGTGGTCGGAGGACGCCATGGGAGAAGCGCTTGAAGCAGTTAGAGTGGGCCAGATGTCGATAAATCAGGCGGCGATACATTTCAACCTGCCTTATTCGTCTCTCTACGGCAGATTCAAGAGATGCAAGTACCAGATGCAGGGCGGACCACACAATCAGCAACAGCAGAACAGTTTCCTCAAGTCCGATATAGACATCCCGCAGCACCAGGCTCATCAGTACTACCACCAAGTGCCCTCCACACACGACCACGACCCGCAAACGTACACCCACATGACTGAGTACCCTCAAAACTTGCAGATGCACGACCAATACGGCCAGTATTACCAATCTTTTGGTAGTATAGCCACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSNSQFAHNYLSGQGSGLEELAPLAPAGPAATPVCVKQERASPPAVMLETLEPAPHHAKSSSLLGRHLTIMNGNEVPDSSDFVPLLAVKDEPSPEGEQPHLSGEDTSDSCGRQLSPILRTSPKNWTQQDMERALDALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSDADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRCGAASVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGGPHNQQQQNSFLKSDIDIPQHQAHQYYHQVPSTHDHDPQTYTHMTEYPQNLQMHDQYGQYYQSFGSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_00636190;
- 80% Identity
- -