Pmus013782.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829111.1:16818891-16831131[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3e-11 6e-09 36.1 0.0 4 39 147 183 144 187 0.89 2 4 1.6e-10 3.3e-08 33.7 0.3 2 39 199 236 198 240 0.92 3 4 1.2e-14 2.4e-12 47.0 0.1 2 45 254 298 253 298 0.96 4 4 2.8e-17 5.7e-15 55.4 0.0 1 42 305 347 305 349 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGTGTGCCCCAGGTGAAACGCGAGCCGCTGTCTGACGAGGAGGATAGCGATTCACAGTTCGCGCACAATTATCTATCTGGTCAGGGTAGTGGCCTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCCGCCGCCACGCCCGTGTGCGTCAAGCAGGAGCGGGCGTCTCCCCCAGCTGCCATGTTGGAGACTCTAGAGTCAGCACCGCAGCATGCTAAGAGCTCGTCGCTATTGGGCCGACACTTAATGGTAATGAACGCGAATGAAGTCCCGGATTCCTCAGATTTTATGCCACTGCTAGCTGTCAAAGATGAACCCTCATCTGAAGGAGAACAGCCTCATCTCAGTGGGGAGGACACTAGTGACTCTTGTGGTAGACAACTGTCACCGATACCGAGGACCAGTCCCAAGAACTGGACGCAACAAGATATGGAGAGAGCGCTGGATGCTCTTCGGAAACACCAGATGAGTCTCACAAAGGCATCTGCCACCTACGGGATCCCTTCTACGACGTTGTGGCAGCGCGCACACCGCCTGGGCATCGACACGCCGAAGAAGGAGGGCGCCGCGAAATCGTGGAGCGAGGCCGACCTGCGCGGGGCCCTGCACGCGCTGAGAGCAGGCGCTATATCTGCTAACAAAGCTAGCAAGGCCTATGGCATCCCCAGCAGCACGCTGTACAAGATCGCCCGCCGCGAGGGCATCCGCCTGTCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGACGCTGGCGCTCGCCGCCATCCGCGCCGGCGCCTCCTCCGTGCAGCGCGCCGCCTCCACCTACGGGATACCCACCGGGACGCTGTACGGGAGGTGCAAGCGAGAGGGCATCGAGCTGTCCCGCGCCAACCCCACGCCGTGGTCGGAGGACGCCATGGGAGAGGCACTTGAAGCAGTTAGGGTGGGCCAAATGTCGATAAATCAGGCGGCGATACATTTCAACCTACCTTATTCGTCGCTCTACGGCAGATTCAAGAGGTGCAAATACCAGATGCAGGGCGGTTCTCACAATCAGCAACAGCATCAAAGCCTTCACAAAACCGAACTGGACCTCCCTCCGCATGAGGCTCACCAGTACTACCACCAAGTGCCGTCCACACACGACCACGACCCGCAGACGTACTCCCACATGACGGAGTATCCTCACAACTTGCAGATGCACGACCAATACGGCCAGTATTACCAAACTTTTAGCAGTATAGCCACCAGCTGA
- Protein Sequence
- MPGHGVPQVKREPLSDEEDSDSQFAHNYLSGQGSGLEELAPLAPAGPAATPVCVKQERASPPAAMLETLESAPQHAKSSSLLGRHLMVMNANEVPDSSDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQLSPIPRTSPKNWTQQDMERALDALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLTLALAAIRAGASSVQRAASTYGIPTGTLYGRCKREGIELSRANPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGGSHNQQQHQSLHKTELDLPPHEAHQYYHQVPSTHDHDPQTYSHMTEYPHNLQMHDQYGQYYQTFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_00636190;
- 80% Identity
- -