Eoch021898.1
Basic Information
- Insect
- Eremobia ochroleuca
- Gene Symbol
- -
- Assembly
- GCA_949629135.1
- Location
- OX451400.1:19735371-19743607[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-11 3e-09 37.5 0.0 4 39 147 183 144 187 0.90 2 4 1.9e-10 4.4e-08 33.7 0.3 2 39 199 236 198 240 0.92 3 4 8.4e-14 1.9e-11 44.5 0.0 2 45 254 298 253 298 0.96 4 4 1.2e-17 2.8e-15 56.8 0.0 1 42 305 347 305 349 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGATGAAGACGACAGTgactcacaattcgcgcacaGTTATCTATCCAGTCAGGGCAGTGGCTTGGACCTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCAGTGTGTGTCAAGCAGGAGCGAGCCGAGTCACCACCAGCTACCACGCTAGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGCACGTCCCTGTTGGATCGCCACATGGACTTTATGAACGTCACCGAAGTGTCTGACTCCACTGACTTCACGCCGCTGTTGGTGGTCAAGGATGAACCCTCGTCCGAAGGTGAACAACCACATCTTAGCAGTGAAGACACGAGCGACTCCTGCGGCCGACAAGCTTCGCCTGCGCCACGACACAGCCCCAAGAGTTGGACCCAACACGACATGGAACGAGCTTTGGATGCTCTCAGAAACCACCAGATGAGCCTTACAAAGgcaTCAGCAACCTACGGAATTCCGTCCACTACACTCTGGCAGCGAGCCCACCGGCTGGGCATAGACACGCCAAAGAAGGAAGGGGCGGCCAAGTCCTGGAGCGAGGCTGATTTGCGAGGGGCTCTGCATGCCTTGAGGGCAGGCGCTATCTCTGCTAATAAGGCCAGCAAAGCTTATGGCATACCCAGCAGTACACTATATAAGATAGCTCGTCGGGAAGGTATCCGCCTGTCGGCGCCATTCAACGCGGCGCCCACCGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCTTCCATACGCTGCGGCGCCAGCTCTGTACAACGTGCTGCCACGCAGTATGGGATACCTACAGGAACGCTATACGGACGGTGTAAGCGAGAGGGAATCGAGCTATCTCGCTCCAATCCCACGCCGTGGTCTGAAGACGCCATGGGCGAAGCTCTCGAAGCTGTCAGGGTGGGCCAGATGTCCATCAATCAGGCAGCGATCCACTACAACCTGCCGTACTCCTCTCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTCCCACAAAATCAGCAACAACCACAGCAAGATCCCCACAAAATGGAGCAAGAGCAACAACACCACGAGGGGCAACAGTACTACCACCAGGTTCCATCCCACCAGGAACCGGACCCGCACACATACGCCCACATGCACGAATACACTCACCAAGACCAGTACGCACAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEDDSDSQFAHSYLSSQGSGLDLAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSLLDRHMDFMNVTEVSDSTDFTPLLVVKDEPSSEGEQPHLSSEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQQQPQQDPHKMEQEQQHHEGQQYYHQVPSHQEPDPHTYAHMHEYTHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -