Bpas003068.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus pascuorum
Gene Symbol
-
Assembly
GCA_905332965.1
Location
HG995273.1:12718114-12721488[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.00026 0.027 15.2 1.5 1 23 102 125 102 125 0.94
2 13 0.0091 0.96 10.4 4.6 2 23 251 273 251 273 0.91
3 13 0.001 0.11 13.3 2.1 3 23 318 339 317 339 0.96
4 13 5.1 5.4e+02 1.7 7.6 3 23 422 443 421 443 0.95
5 13 0.024 2.5 9.1 1.6 1 23 492 515 492 515 0.94
6 13 0.00016 0.017 15.9 0.9 2 23 563 585 562 585 0.96
7 13 0.00066 0.07 13.9 0.1 3 23 609 630 608 630 0.91
8 13 0.0067 0.71 10.8 3.6 2 23 672 694 671 694 0.96
9 13 0.091 9.6 7.2 4.2 3 23 709 730 707 730 0.92
10 13 0.00023 0.024 15.4 0.1 2 23 775 797 775 797 0.94
11 13 0.062 6.5 7.7 1.4 1 23 876 898 876 898 0.98
12 13 0.0039 0.41 11.5 3.5 2 23 911 933 910 933 0.96
13 13 0.023 2.5 9.1 1.3 1 23 1006 1029 1006 1029 0.98

Sequence Information

Coding Sequence
ATGTCCTCGACGATGGCGCATGAGACGACGACGATATCGGAATTGACGGAATTGGACAGCGACGGATCGAGTTGCGGAGAGCGCGACGCGAGGAAACGTCCTCGGTTCGACGCGGATTCAACAGGGCCGAAGAAGAGACGAAAACAAACGACGCCCGTGAGATTCTCCTCGACGTTAATGCCCGGTGTGCACGAAGAATCGAACGAGGACGAGGAAGAGGACGAGGACAGCGAAGGTAAGCTGTCGTCGCAATCACCCATACCGAGTCAATCATCGATAAGAGACGAGAACCTGAATAACGAATTCCGTTGCAAATATTGTAGTCAGTTTTTCGATAGCAAGGAAACGTTAAACGTTCACCTCGACAATGAGCACGGTTCCGCGAATCAAATTTCGGAACAAAGTCAAAGTAGATCTCCGAATTCCGTGATCAAACAAGAACCGTCTCAGCAACTGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTAAAGAACTTCGCGATAAACTGGCTAGCCACCGGGCAACACGTGCAATCGCAAGCACAAATGCAGACGCAGAACGAAGAATCCTGGCCCGGGCCAGCGAGTCAAATTCCACCGTTACCCAACCACTTGCAAATCCTTTCTGGCTTTCCTGGCGCCTTGGCGCAGTATTTACCTATGCCCGCGTTCCCATTGACGGAGTCCGGTTCTATCGCCAGGCCCTCGTTGGGACCAACGCCGGTCAGAATCTTTAATCCGGACGCGTACTGTGATCTGTGCAATAAAGAGTTCTGCAACAAGTATTTCCTCAAGACACACAAAGCGAACAAGCACGGTATCTACGTCGATTCACCGGGACCGAGCACCGTCGACAATAGCATTCCAGGACCATTGTTCCCTACCAACTATCCTAGTAACATGGTTAAGATAGAACTACCCGCGACACCACCTACACCGACCGTCGCGTGTGATCTCTGCCAGAAACGTTTCAAAAACGAGGAATCGATGCGTAAACACAAACAAAAGATGCACGCTGAATTATTGGATCAGTCGCAAGAGATCAATTTGTCGCAAAACGAAGAGGATAGGGATACGTCGAGGGATAGTCTCGGCGGTATGGAAACGTTGTTTAAGCAGGAATACGGGATAGAACAAGAGGATGCAACGTTCGTACCAGCACCCAGACACCTATCGCCTCAATCGATTCAACAGGCACGAGAATCCGGTTTCAGCGCTGATCGACTTCGCCGTTTAGGGGTTATAAATCCAGACGCGTTTTGCGAGATATGTTGTAAAGAGTACTGTAATAAGTACTTCCTACGGACTCATAAAATGAAAAGGCACGGTATCATCGTTCAAGACAATGAAAGATCGCCTAGCAATCCAGGGACAGCGGCCAGTTGGCATCAAGTGCAGACCAGTCCGTTAAATCTGATCGTGACGGAGAATCCTGGTAGCTCAGAATCGAACGATCGAGCCGTCGACGATTACGAGTGCAAGTTATGTGGTATACGTTTCCAGACGATTGGGCTGTATCAAGCTCACTGTCGGAAGATGCACGAGAGCGAGGAACAACAATCGCCTAGGCAAGAGTGCGAGCTAGATATATCCGATCAACGGAACGATTCGATCTCGGAGGATCTTCAAAAACTGCAGACGATGCTGTTGCAACTGAACGGACTCAAGCCTACCAAGGGATTATCGTGCAACGTGTGCGGAAAAGAATGCGAGACCAGAGCAGCGTTGCATATTCATATGATAACGGAGCACGGCGCCATCCAAGAAGATTCAACATCCTCGCCGCAAGAAAAGTCACCCTTAACTACAACCTCAGCGTTCTGCGCCCTATGTGGAAAAGATTACGCGAGTCAGGACGCTCTCAGGAAACATATCGCCGACGAACATCAACCAGCGGTTTCGAATACCATTCCTCACACTTCTACAACCACAGCGACAACGACCAATTCGAATTCGACCAGCCAAACTCCAACCGAGAGAAAGGTAACGTCGATGACGCCAACGTCGAGCTATTGCGAGATATGCAACAAGGAATTATGCAATAAGTACTTCATGAAGACGCATATGCAAAGAATGCACGGTATTGAGATTGAAAATGGAGCCCAGATCGGTGGCGTGATATGCAACATTTGCAACAAGGAGCTGTGCAGCAAATACTTTTTACGCGTTCACAAGCACAACACTCACGGCATAGTCGACGAAAATACTCCCAGTTCGGTAAAACAAGAGACCCACGAGGCATCAAACGCGGACGATGCTGCTTTGAAGCCGGAGCAACTCGGTGATCTGAGTCACAGATATTTCACCCACTTTACAGAGGTTTGTCCAATCTGTAGCAGAAGGTTCCGCAGTATAAAGTGGTTAAAGGCTCACCTGATGGGTGATCATGGAAAAACAGGCATCGATAAATGGCGCGAGATGGAGCAACAATATCAAACAACGCCGAAATCAGGGAATAGAACGGCGAATGCGATATCGAAGAATCCTCAACAGAGCTCGAATTTGAAGATACCGAATGGATTTGAAATCTCACAGCAAATCAGGTCTGCCGACTACACTGGTTTGGGTAATCAAGTTCTGTCAAATTTACTGGGATCATCTTCCGAAGATCAGTCGAAAAGCTATCGCTGTTCCTATTGCAATTTCACGTCCTCCGTGTTACCGTTTCTCTTCCTTCACGAGAGGTCTCACGTGAATATCCGTGACAACGAAGGAGAGAAATCGCTTCAATGTCCGATTTGCTCCCAAGGTTTCCATCAGCTGGATATGTTGCATCATCATCTCCTCACGTCGCACCAATTTCCCATGTTGCTGCCTCATTTTCAACCCCCTGTGCTTAATAATTTAGGTCTTGACGCAGAGAAATTGAACGAGGCCAAAGAAAAACTCGATCTGGAAGCGAAGGAGGACCATACGAGGAACAGTCCACAAGCTATCACCAATCAAAATATTCCCGAACCGATGAGAAACAAACAGGACGAAACAGCGGTCCAAGTTACTCCTCATGGTATATATAAGTGCGCACAGTGCAATTACGCGACGACCAATTTAAATAGAATTAAGAAGCACGTGAGAAAAGATCACAAAACGATCAGCGATCCTACCGATAGCGTGCTCGCCGAGCTTAGCAGAACTTTGAAAGACGTTGCCAACAAACATAAGGTACCAGCTTGCTACGCAACGCCACAGGACATGAATTCCAATCCTGATAAAACGATCATGCAGCCATTTTTAATCGAAGAACAGGACACGATGCAAGCTGGAGAGGAATCCAGCTCGGAGAAACGGTTCGCGCCGGCTTTGGTCTATCTGCCGGTTAAATCGCGAATCAACAACGTGCTCACTGCATCCTTTACCCTCAGTCCTGCTTGA
Protein Sequence
MSSTMAHETTTISELTELDSDGSSCGERDARKRPRFDADSTGPKKRRKQTTPVRFSSTLMPGVHEESNEDEEEDEDSEGKLSSQSPIPSQSSIRDENLNNEFRCKYCSQFFDSKETLNVHLDNEHGSANQISEQSQSRSPNSVIKQEPSQQLDQSENPVNLLSVKNFAINWLATGQHVQSQAQMQTQNEESWPGPASQIPPLPNHLQILSGFPGALAQYLPMPAFPLTESGSIARPSLGPTPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSTVDNSIPGPLFPTNYPSNMVKIELPATPPTPTVACDLCQKRFKNEESMRKHKQKMHAELLDQSQEINLSQNEEDRDTSRDSLGGMETLFKQEYGIEQEDATFVPAPRHLSPQSIQQARESGFSADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIIVQDNERSPSNPGTAASWHQVQTSPLNLIVTENPGSSESNDRAVDDYECKLCGIRFQTIGLYQAHCRKMHESEEQQSPRQECELDISDQRNDSISEDLQKLQTMLLQLNGLKPTKGLSCNVCGKECETRAALHIHMITEHGAIQEDSTSSPQEKSPLTTTSAFCALCGKDYASQDALRKHIADEHQPAVSNTIPHTSTTTATTTNSNSTSQTPTERKVTSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTPSSVKQETHEASNADDAALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKTGIDKWREMEQQYQTTPKSGNRTANAISKNPQQSSNLKIPNGFEISQQIRSADYTGLGNQVLSNLLGSSSEDQSKSYRCSYCNFTSSVLPFLFLHERSHVNIRDNEGEKSLQCPICSQGFHQLDMLHHHLLTSHQFPMLLPHFQPPVLNNLGLDAEKLNEAKEKLDLEAKEDHTRNSPQAITNQNIPEPMRNKQDETAVQVTPHGIYKCAQCNYATTNLNRIKKHVRKDHKTISDPTDSVLAELSRTLKDVANKHKVPACYATPQDMNSNPDKTIMQPFLIEEQDTMQAGEESSSEKRFAPALVYLPVKSRINNVLTASFTLSPA