Basic Information

Insect: Melipona quadrifasciata
Gene Symbol: -
Assembly: GCA_001276565.1
Location: KQ435794.1:1997334-2016320[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00023 0.019 15.1 1.5 1 23 144 167 144 167 0.94

2 13 0.008 0.68 10.2 4.6 2 23 291 313 291 313 0.91

3 13 0.00089 0.076 13.2 2.1 3 23 358 379 357 379 0.96

4 13 4.5 3.8e+02 1.5 7.6 3 23 466 487 465 487 0.95

5 13 0.067 5.7 7.3 1.9 1 23 538 561 538 561 0.94

6 13 6.9e-05 0.0059 16.7 0.3 2 23 609 631 608 631 0.95

7 13 0.00041 0.034 14.3 0.0 3 23 656 677 655 677 0.91

8 13 0.0058 0.5 10.6 3.6 2 23 718 740 717 740 0.96

9 13 0.079 6.7 7.1 4.2 3 23 755 776 753 776 0.92

10 13 0.0002 0.017 15.2 0.1 2 23 821 843 821 843 0.94

11 13 0.064 5.5 7.3 1.4 1 23 923 945 923 945 0.98

12 13 0.0011 0.09 13.0 0.7 2 23 959 981 958 981 0.93

13 13 0.0052 0.44 10.8 0.8 1 23 1054 1077 1054 1077 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00023	0.019	15.1	1.5	1	23	144	167	144	167	0.94
2	13	0.008	0.68	10.2	4.6	2	23	291	313	291	313	0.91
3	13	0.00089	0.076	13.2	2.1	3	23	358	379	357	379	0.96
4	13	4.5	3.8e+02	1.5	7.6	3	23	466	487	465	487	0.95
5	13	0.067	5.7	7.3	1.9	1	23	538	561	538	561	0.94
6	13	6.9e-05	0.0059	16.7	0.3	2	23	609	631	608	631	0.95
7	13	0.00041	0.034	14.3	0.0	3	23	656	677	655	677	0.91
8	13	0.0058	0.5	10.6	3.6	2	23	718	740	717	740	0.96
9	13	0.079	6.7	7.1	4.2	3	23	755	776	753	776	0.92
10	13	0.0002	0.017	15.2	0.1	2	23	821	843	821	843	0.94
11	13	0.064	5.5	7.3	1.4	1	23	923	945	923	945	0.98
12	13	0.0011	0.09	13.0	0.7	2	23	959	981	958	981	0.93
13	13	0.0052	0.44	10.8	0.8	1	23	1054	1077	1054	1077	0.98

Sequence Information

Coding Sequence: ATGGGACTACTATTGTCCAGCTGTCCAGTAATGGACGACCCTCTTTTAGCTCGAGCTAATAATGCCGAATTGATCCGGGACGCTTTTCGGTGGCGCGGGATCGGGACGTTGTCACGTCCTCCTGGCAAGATGTCCTCAACGATGGCGCATGAGACGACGATATCGGAGTTGACGGAATTGGACAGCGACGGATCGAGTTGCGGTGAACGCGACGCGAGGAAACGTCTTCGTTTCGACGTGGACTCGACCGGGCCGAAGAAGAGGCGAAAACAAACGACGCCCGTGAGATTCTCGTCGACGTTGGTGCCCGGCGCGCACGAGGAATcgaacgaggacgaggacgaggacgaggacagCGAAGGTAAGCTGTCGTTGCAATCACCCGTGCCGTGTCAATCGTCGATAAGGGACGAGAACCTGAATAACGAATTCCGTTGCAAATACTGTAGTCAGTTTTTCGACAGCAAAGAAACGCTGAACGTTCACCTCGACAATGAGCACGGCTCCGCGAGTCAGAGTCGAAATAGGTCTCCGAATGCCGCGGTCAAACAAGAATCGTCTCAGCAGCTGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTGAAGGACTTCGCGATAAATTGGCTAGCTAGCGGGCAACACGTGCAATCGCACAACGCACAAATGCAGACGCAGAACGAGGAATCCTGGATACCCGGATCGGTCAATCATATCCCACCGTTGCCCAACCACTTGCAAATCCTTTCTGGCTTTCCCGGCGCGTTGGCGCAATATTTGCCCGTGCCCGCGTTCCCGTTAACAGATTCCGGCTCGATGATGAAACCGTCGTTGGGACCAACGCCGGTCAGGATCTTCAATCCGGAAGCGTACTGTGATCTGTGCAATAAAGAATTCTGCAACAAGTATTTCCTCAAGACGCACAAAGCGAACAAGCACGGCATCTACGCCGATTCGCCGGGACCCAGCACCGTGGACAATAGCATTTCAGGGCCATTGTTCCCTGCCAACTATTCCAGTAACGTGATTAAGCTGGAACTACCCCCTACGCCACCTACGCCGACCGTCGCGTGTGATCTCTGTCAGAAGCGTTTCAAGAACGAGGAATCGATGCGCAAACACAAGCAAAAGATGCACACCGAGCTGCTGGATCAGTCGCAGGAGTCGCAGTCCGTCAATCTGTCGCAAAACGAGGAGGACAGGGACACCCCGAGGGACAGTCTCGGTGGTATGGAGACGTTGTTTAAACAAGAGTACGGGACACTGGAGCAGGAGGACGCGACGTTCGTACCAGCGCCCAGGCATCTATCGCCTCAATCGATTCAGCAGGCACGGGACTCGGGTTTCAGCGCCGATCGGCTTCGTCGTTTGGGTGTCCTAAACCCGGAGGCGTTCTGCGAGATATGCTGCAAAGAGTATTGCAACAAGTACTTCCTGCGTACGCACAAAATGAAGAGGCACGGCATCGTCGTTCACGACAACGAGAGATCGCCCGGCAGTCAAGGAACGGCGCCCAGCTGGCATCAAGTGCAGACCAGCCCGTTGAATCTGATCGTGACGGAGTCGAATTCTGGTAGCACGgagtcgaacgaacgagcagCCGGCGACGACTACGAGTGCAAATCGTGCGGGATACGTTTCCAGACGATTGGCCTGTATCAGGCACACTGTCGGAAGATGCACGAGAGCGAGGAGCAGCAGTCGCCCAGGCCAGACTGCGAGTTGGACGCGGCCGATCAACGAAACGATTCCATCTCGGAGGATCTTCAGAAATTGCAGACGATGCTGTTGCAGTTGAACGGGCTTAAGTCTAGCAAGGGGTTATCGTGCAACGTGTGCGGAAAAGAATTCGAGACCAGAGCTGCGTTGCATATTCATACGATAACGGAGCACGGAGCACAGAGCCAAGAAGATTCGACGTCCTCGCCGCAAGAAAAATCACCGTTAACCACGACCGTCGCCTACTGCGCCCTGTGCGGCAAGGATTACGCGAGCCAAGACGCTCTCAGGAAGCACATCGCCGACGAACATCAACCACCGATTTCGAATGCCACTTTTCCTCACACTCCCACGGCGACAACGACCAACGCGAGTTCGACCAGCCAGACTCCGACGGAGAGGAAAGTCACGTCGATGACGCCCACGTCCAGCTACTGCGAGATATGCAACAAGGAGTTGTGCAATAAGTACTTCATGAAGACGCACATGCAAAGAATGCACGGCATCGAGATCGAGAACGGAGCCCAGATCGGAGGCGTGATATGCAACATTTGCAACAAGGAACTGTGCAGCAAGTACTTTCTTCGCGTTCACAAGCACAACACCCACGGCATAGTCAATGAAAACACTGCCAGTTCGGTGAAACAAGAGGCTCACGAAACAACGAGCGCGGACGATGCCGCTTTGAAACCGGAACACCTCGGTGATCTCAGCCACAGATACTTTACTCACTTCACAGAGGTTTGTCCGATCTGCAGCAGGAGGTTCCGTAGTATAAAGTGGCTAAAGGCACACCTGATGGGTGATCACGGGAAAACAGGTGTCGATAAATGGCGCGAAATGGAGCAACAGTATCAAACGATGCCAAAATCAGGGAACAGAGCAGTAAACGTGGCGTCGAAGAGTGCTCAACAGAGCTCGAACCTGAAAATACCGAATGGATTTGAAATGTCGCAACAATTCAAGTCCACCGACTACGCTGGCTTGGGTAATCAAGTTTTGTCGAATTTACTAGGGTCGTCTACCGAAGATCAGCAGCTGAAAAGCTATCGTTGCTCCTATTGCAATTTCATGACTACCGTGCTGCCGTTCCTCTTTCTTCACGAAAGGTCTCACGTGATTTCGCACGACAACACGGAAGGAGAAAAATCGCTGCAGTGCCCGATCTGCTCGCAAGCTTTTCATCAGCCGGAGATGCTGCATCAGCATCTACTCGCGTCGCACCAGTTCCCCACTTTGCTGCCTCATTTTCAACCCCCTGTGTATAATTTATGCCTGGACGCGGAGAAGTTGAACGAAGCCAAAGAGAAACTCGAGGTGGAAGCAAAGGAGGATCGCACCGAGAACAGTTCGCAAGCGATTGCCAGTCAACATATTCCCGATCCGACGAGAAACAAACGACAGGAGGAAACGGCGGTGCAAGTCACGCCTCACGGTGTGTACAAGTGCGCGCAGTGCGGCTACGCGACGACCAATTTGAACAGGATCAAAAAGCACGTGAGGAAAGATCACAGAACGATCAGCGATCCTACCGACAGCGTGCTCGCCGAACTCAGCAGAACTCTGAAAGACGTTGCCAATAAGCACAAGGTGCCAGCTTGCTACGCGACGCCGCAGGACATGAATTCGAATCCTGACAAGACGATCATGCAGCCGTTTCTCATCGAGGAACAGGACACGATGCAAGCTGGAGAGGAGTCTAGCTCGGAGAGGCGATTCGCGCCGGCTTTGGTCTACCTGCCGtgGCATTGTAGAGGAGACGGCGAGTTGGGTCTGGGTAAACGGTCCCACATCTGGTCCCCTTGTGCGAAGGTCGTGGAGAAGAAAGGTCACGACCTTGGCCGGGATTTTTCCGAAAAAGTCCGCACAGAAACGAGCCAAACGAAGGAAGGGGATGGAGTGCAGAGGGCGGAGAGCACaaaggaaaagaatcaTGACGATCCTGGCCATCCTGGGGATCATGGAATTTCACTGCAAGCGGCGTGTCCCGAAACGAGTATTGCCTTGACTAACaaaaatttgttgcacAAAGTGGCACCTGATTAA
Protein Sequence: MGLLLSSCPVMDDPLLARANNAELIRDAFRWRGIGTLSRPPGKMSSTMAHETTISELTELDSDGSSCGERDARKRLRFDVDSTGPKKRRKQTTPVRFSSTLVPGAHEESNEDEDEDEDSEGKLSLQSPVPCQSSIRDENLNNEFRCKYCSQFFDSKETLNVHLDNEHGSASQSRNRSPNAAVKQESSQQLDQSENPVNLLSVKDFAINWLASGQHVQSHNAQMQTQNEESWIPGSVNHIPPLPNHLQILSGFPGALAQYLPVPAFPLTDSGSMMKPSLGPTPVRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYADSPGPSTVDNSISGPLFPANYSSNVIKLELPPTPPTPTVACDLCQKRFKNEESMRKHKQKMHTELLDQSQESQSVNLSQNEEDRDTPRDSLGGMETLFKQEYGTLEQEDATFVPAPRHLSPQSIQQARDSGFSADRLRRLGVLNPEAFCEICCKEYCNKYFLRTHKMKRHGIVVHDNERSPGSQGTAPSWHQVQTSPLNLIVTESNSGSTESNERAAGDDYECKSCGIRFQTIGLYQAHCRKMHESEEQQSPRPDCELDAADQRNDSISEDLQKLQTMLLQLNGLKSSKGLSCNVCGKEFETRAALHIHTITEHGAQSQEDSTSSPQEKSPLTTTVAYCALCGKDYASQDALRKHIADEHQPPISNATFPHTPTATTTNASSTSQTPTERKVTSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVNENTASSVKQEAHETTSADDAALKPEHLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKTGVDKWREMEQQYQTMPKSGNRAVNVASKSAQQSSNLKIPNGFEMSQQFKSTDYAGLGNQVLSNLLGSSTEDQQLKSYRCSYCNFMTTVLPFLFLHERSHVISHDNTEGEKSLQCPICSQAFHQPEMLHQHLLASHQFPTLLPHFQPPVYNLCLDAEKLNEAKEKLEVEAKEDRTENSSQAIASQHIPDPTRNKRQEETAVQVTPHGVYKCAQCGYATTNLNRIKKHVRKDHRTISDPTDSVLAELSRTLKDVANKHKVPACYATPQDMNSNPDKTIMQPFLIEEQDTMQAGEESSSERRFAPALVYLPWHCRGDGELGLGKRSHIWSPCAKVVEKKGHDLGRDFSEKVRTETSQTKEGDGVQRAESTKEKNHDDPGHPGDHGISLQAACPETSIALTNKNLLHKVAPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_01417927;
80% Identity: -