Basic Information

Insect: Tetragonula mellipes
Gene Symbol: -
Assembly: GCA_011634685.1
Location: WINE01003577.1:3787-7197[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00021 0.062 15.2 1.5 1 23 102 125 102 125 0.94

2 13 0.0075 2.2 10.3 4.6 2 23 249 271 249 271 0.91

3 13 0.0011 0.31 13.0 4.1 3 23 316 337 315 337 0.96

4 13 4.2 1.2e+03 1.7 7.6 3 23 423 444 422 444 0.95

5 13 0.05 15 7.7 1.5 1 23 497 520 497 520 0.94

6 13 0.00034 0.099 14.6 0.2 2 23 568 590 567 590 0.96

7 13 0.00054 0.16 13.9 0.1 3 23 615 636 614 636 0.91

8 13 0.0055 1.6 10.8 3.6 2 23 678 700 677 700 0.96

9 13 0.074 22 7.2 4.2 3 23 715 736 713 736 0.92

10 13 0.00019 0.055 15.4 0.1 2 23 781 803 781 803 0.94

11 13 0.034 10 8.2 1.6 1 23 884 906 884 906 0.98

12 13 0.00051 0.15 14.0 1.3 2 23 920 942 919 942 0.96

13 13 0.0048 1.4 10.9 0.8 1 23 1018 1041 1018 1041 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00021	0.062	15.2	1.5	1	23	102	125	102	125	0.94
2	13	0.0075	2.2	10.3	4.6	2	23	249	271	249	271	0.91
3	13	0.0011	0.31	13.0	4.1	3	23	316	337	315	337	0.96
4	13	4.2	1.2e+03	1.7	7.6	3	23	423	444	422	444	0.95
5	13	0.05	15	7.7	1.5	1	23	497	520	497	520	0.94
6	13	0.00034	0.099	14.6	0.2	2	23	568	590	567	590	0.96
7	13	0.00054	0.16	13.9	0.1	3	23	615	636	614	636	0.91
8	13	0.0055	1.6	10.8	3.6	2	23	678	700	677	700	0.96
9	13	0.074	22	7.2	4.2	3	23	715	736	713	736	0.92
10	13	0.00019	0.055	15.4	0.1	2	23	781	803	781	803	0.94
11	13	0.034	10	8.2	1.6	1	23	884	906	884	906	0.98
12	13	0.00051	0.15	14.0	1.3	2	23	920	942	919	942	0.96
13	13	0.0048	1.4	10.9	0.8	1	23	1018	1041	1018	1041	0.98

Sequence Information

Coding Sequence: ATGTCCTCAACGATGGCGCATGAGGCGACGATATCGGAGTTGACGGAATTGGACAGCGACGGATCGAGTTGCGGTGAACGCGACGCGAGGAAACGTCTCCGTTTCGACGTGGATTCGACCGGGCCGAAGAAGAGGCGAAAACAAACGACGCCCGTGAGATTCTCCTCGACGTTGGTCCCCGGCGTGCACGAGGAATcgaacgaggacgaggacgaggacgaggacagCGAAGGTAAGCTGTCGTCGCAATCACCGGTGCCGTGTCAATCGTCGATAAGGGACGAGAATAACCTGAATAACGAGTTCCGTTGCAAATACTGTAGTCAGTTTTTCGACAGCAAAGAAACGCTGAACGTTCACCTCGACAATGAGCACGGCTCCGCGAGTCAGAGTCGAAATAGGTCCCCGAATGTCGCGGTCAAACAAGAATCGTCACAGCAGCTGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTGAAGGACTTCGCGATAAATTGGCTAGCCAGCGGGCAACACGTGCAATCGCACAATGCACAAATGCAGACGCAGAACGAGGAACCGTGGATGCCCGGATCAGTTAGTCAAATGCCATCGTTACCCAATCACTTGCAAATCCTTTCTGGCTTTCCTAGCGCGTTGGCGCAATATTTACCAGTGCCCGCGTTCCCGTTAACAGATTCCGGTTCCATGGTGAAACCGTCGTTAGGACCAACGCCAGTCAGGATCTTTAATCCGGAAGCGTACTGTGATCTGTGCAATAAAGAATTCTGCAACAAGTATTTCCTCAAGACGCACAAAGCGAACAAGCACGGTATCTACGCCGACTCGCCGGGACCTAGCACCCAGGACAATAGCATTCCAGGGCCATTGTTCCCTACCAACTATTCTAGTAACGTGATTAAGCTGGAACTACCGCCTACGCCGCCTACGCCGACCGTCGCGTGCGATCTCTGTCACAAGCGTTTCAAGAACGAGGATTCGATGCGTAAACACAAGCAGAAGATGCACACCGAGCTGCTGGATCAGTCGCAGGAGTCGCAGTCCATCAATTTGTCGCAAAACGAGGAGGACAGGGACACCCCGAGGGACAGTCTCGGCGGTATGGAGACGTTGTTCAAACAGGAATACGGGATAGAGCAGGAGGACGCAACGTTCGTACCAGCGCCTAGGCATCTATCGCCTCAATCGATTCAGCAGGCTCGGGACTCGGGTTTCAGCGCCGATCGGCTTCGTCGTTTGGGAGTTATAAACCCGGAGGCGTTCTGCGAGATATGCTGCAAAGAGTATTGCAACAAGTACTTCCTGCGAACGCACAAAATGAAGAGGCACGGGATCGTCGTACACGACAACGAGAGATCACCACCGAGCAATCCAGGAGCGGCGCCCAGCTGGTATCAAGTGCAGACCAGCCCGTTGAATCTGATCGTGACGGAGTCGAATTCTGGTAGCACGgagtcgaacgaacgagcaGCCGGCGACTCCGATTACGAGTGCAAGTCGTGCGGGATACGTTTCCAGACGATTGGCCTGTATCAAGCTCACTGTCGGAAGATACACGAGAGCGAGGAGCAGCAGTCGCCCAGGCCAGACTGCGAGTTGGACGCGGCCGATCAACGAAACGATTCGATCTCGGAGGATCTTCAGAAATTGCAGACGATGCTGTTGCAGTTGAACGGGCTTAAGTCTAGCAAGGGGTTATCGTGCAACGTGTGCGGAAAAGAATCCGAGACCAGAGCTGCGTTGCATATTCATATGATAACGGAGCACGGAGCTGCTAGCCAAGAAGATCCAACGTCCTCGCCGCAAGGAAGATCACCCTTAACCACGAACGTCGCGTTCTGCGCCCTCTGCGGCAAAGATTACGCGAGTCAAGACGCACTCAGGAAGCACATCGCCGACGAACATCAACAACCACCGATTTCAAATGCCAGCGTTCCTCACGCTCCTACGGCGACTACGACCAATACAAATTCGTCGAGCCAGACTCCGACGGAGAGGAAAGTCACGTCGATGACGCCCACGTCCAGCTACTGCGAGATATGCAACAAGGAGTTGTGCAACAAGTACTTCATGAAGACGCACATGCAAAGAATGCACGGCATTGAGATCGAAAACGGAGCCCAGATCGGAGGCGTGATATGCAACATTTGCAACAAGGAGCTGTGCAGCAAGTACTTTCTGCGCGTTCACAAGCACAACACCCACGGCATAGTCGATGAAAATACTGCCAGTTCGGTGAAACAAGAGGCCCACGAAACAACGAGTGCGGACGATGCTGCTTTGAAGCCGGAACAGCTCGGTGACCTGAGTCACAGATACTTCACTCACTTCACAGAGGTTTGCCCGATCTGTAGCAGAAGGTTCCGTAGTATAAAGTGGTTGAAGGCACACCTGATGGGTGATCATGGGAAAACGGGTGTCGACAAATGGCGCGAAATGGAGCAACAGTATCAAACGATGCCGAAATCGGCGAACAGAGCGGTAAATATGATATCGAAGAACGCTCAACAGAGCTCGAATCTGAAGATACCGAATGGATTTGAAATGTCGCAACACCTCAAGTCCACCGACTACACTGGTTTGGGTAATCAAGTTCTGTCGAATTTACTAGGCTCGTCTACGGAAGCAGATCAGCAGGTGAAAAGCTATCGTTGCTCCTACTGCAATTTCACGACCACCGTGCTGCCATTCCTCTTTCTTCACGAGAGGTCTCACGTAATTTCGCACGACAACATCGAAGGAGAAAAATCGCTGCAATGCCCGATTTGCTCGCAAGGTTTTCATCAGCCGGAGATGCTGCATCAGCATCTGCTCACGTCGCACCAGTTCCCCACTTTGCTGCCCCATTTCCAACCCCCTCTGTTTAACAGTTTAAGCCTGGACGCGGAGAAGTTGAACGAAGCCAAAGAGAAACTCGACGTGGAAGCAAAGGAGGATCGCATCGAGAACAGTTCGCAAGCCATTGCCAGCCAGCAACATATTCCCGATCCGGCGAGAAACAAACGACAGGCGGACGAAACGGCGGTGCAAGTCACGCCTCACGGTGTGTATAAATGCGCGCAGTGCGGCTACGCGACGACCAATTTGAACAGGATCAAAAAACACGTGAGGAAAGATCACAGAACGATCAGCGATCCTACCGACAGCGTGCTCGCCGAGCTCAGCAGAACTTTGAAAGACGTTGCCAACAAGCACAAGGTGCCAGCTTGCTACGCCACGCCGCAGGACATGAATTCGAATCCTGACAAGACGATCATGCAGCCGTTTCTAATCGAGGAACAGGACACGATGCAAGCTGGAGAGGAGTCCAGCTCGGAGAGACGATTCGCGCCGGCTTTGGTCTACTTGCCGGTTAAATCGCGAATCAACAACGCGTTCACCGCGTCCTTCACCCTCAGTCCTGCTTGA
Protein Sequence: MSSTMAHEATISELTELDSDGSSCGERDARKRLRFDVDSTGPKKRRKQTTPVRFSSTLVPGVHEESNEDEDEDEDSEGKLSSQSPVPCQSSIRDENNLNNEFRCKYCSQFFDSKETLNVHLDNEHGSASQSRNRSPNVAVKQESSQQLDQSENPVNLLSVKDFAINWLASGQHVQSHNAQMQTQNEEPWMPGSVSQMPSLPNHLQILSGFPSALAQYLPVPAFPLTDSGSMVKPSLGPTPVRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYADSPGPSTQDNSIPGPLFPTNYSSNVIKLELPPTPPTPTVACDLCHKRFKNEDSMRKHKQKMHTELLDQSQESQSINLSQNEEDRDTPRDSLGGMETLFKQEYGIEQEDATFVPAPRHLSPQSIQQARDSGFSADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVVHDNERSPPSNPGAAPSWYQVQTSPLNLIVTESNSGSTESNERAAGDSDYECKSCGIRFQTIGLYQAHCRKIHESEEQQSPRPDCELDAADQRNDSISEDLQKLQTMLLQLNGLKSSKGLSCNVCGKESETRAALHIHMITEHGAASQEDPTSSPQGRSPLTTNVAFCALCGKDYASQDALRKHIADEHQQPPISNASVPHAPTATTTNTNSSSQTPTERKVTSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTASSVKQEAHETTSADDAALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKTGVDKWREMEQQYQTMPKSANRAVNMISKNAQQSSNLKIPNGFEMSQHLKSTDYTGLGNQVLSNLLGSSTEADQQVKSYRCSYCNFTTTVLPFLFLHERSHVISHDNIEGEKSLQCPICSQGFHQPEMLHQHLLTSHQFPTLLPHFQPPLFNSLSLDAEKLNEAKEKLDVEAKEDRIENSSQAIASQQHIPDPARNKRQADETAVQVTPHGVYKCAQCGYATTNLNRIKKHVRKDHRTISDPTDSVLAELSRTLKDVANKHKVPACYATPQDMNSNPDKTIMQPFLIEEQDTMQAGEESSSERRFAPALVYLPVKSRINNAFTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_01417927;
80% Identity: -