Basic Information

Insect: Apis mellifera
Gene Symbol: -
Assembly: GCA_003254395.2
Location: NC:11602646-11610550[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00019 0.011 15.2 1.5 1 23 101 124 101 124 0.94

2 13 0.0068 0.41 10.3 4.6 2 23 260 282 260 282 0.91

3 13 0.0011 0.069 12.8 1.7 3 23 328 349 327 349 0.96

4 13 3.8 2.3e+02 1.7 7.6 3 23 435 456 434 456 0.95

5 13 0.008 0.49 10.1 0.4 1 23 505 528 505 528 0.97

6 13 0.0031 0.19 11.4 1.0 2 23 579 601 578 601 0.95

7 13 0.034 2.1 8.1 0.1 6 19 629 642 628 645 0.94

8 13 0.005 0.3 10.8 3.6 2 23 688 710 687 710 0.96

9 13 0.067 4.1 7.2 4.2 3 23 725 746 723 746 0.92

10 13 0.00017 0.01 15.4 0.1 2 23 791 813 791 813 0.94

11 13 0.031 1.9 8.2 1.6 1 23 895 917 895 917 0.98

12 13 0.0016 0.097 12.3 0.8 2 23 929 951 928 951 0.93

13 13 0.0032 0.19 11.4 0.8 1 23 1026 1049 1026 1049 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00019	0.011	15.2	1.5	1	23	101	124	101	124	0.94
2	13	0.0068	0.41	10.3	4.6	2	23	260	282	260	282	0.91
3	13	0.0011	0.069	12.8	1.7	3	23	328	349	327	349	0.96
4	13	3.8	2.3e+02	1.7	7.6	3	23	435	456	434	456	0.95
5	13	0.008	0.49	10.1	0.4	1	23	505	528	505	528	0.97
6	13	0.0031	0.19	11.4	1.0	2	23	579	601	578	601	0.95
7	13	0.034	2.1	8.1	0.1	6	19	629	642	628	645	0.94
8	13	0.005	0.3	10.8	3.6	2	23	688	710	687	710	0.96
9	13	0.067	4.1	7.2	4.2	3	23	725	746	723	746	0.92
10	13	0.00017	0.01	15.4	0.1	2	23	791	813	791	813	0.94
11	13	0.031	1.9	8.2	1.6	1	23	895	917	895	917	0.98
12	13	0.0016	0.097	12.3	0.8	2	23	929	951	928	951	0.93
13	13	0.0032	0.19	11.4	0.8	1	23	1026	1049	1026	1049	0.98

Sequence Information

Coding Sequence: ATGGCGCACGAGGCGACGATATCGGATTTGACGGAATTGGACAGCGACGGATCGAGTTGCGGAGAGCGCGACGCCAGGAAACGTCTTCTTCGTTTCGACGTGGATCGAGCGACGGGGCCGAAGAAGAGGCGAAAACAAACGACGCCCGTCAGATTCTCGTCAACGTTGATGCCCGGCGTGCACGAGGAGTCgaacgaggacgaggacgaggacgaggagggCAGCGAAGGTAAGCTGTCGTCGCAATCACCCAATCACCCGAGTCGATCGTCGATAAGGGACGAGAACCTGAATAACGAATTCCGTTGCCAATACTGTAGCcagtttttcgatcgaaaggaaACGTTGAACGTTCACCTGGACAATGAGCACGGTTCAATAGCGAATAGCATATCGGGACAACGATGCCCGAGTAGTAGGTCTCCCCCCGATCGAGCGATCAAGCAGGAACCGTCTCACCAACTGGACCAATCCGAGAACCCCGTTAATTTGCTTAGCGTAAAGAATTTCGCGATAAATTGGCTGGCCACCGGGCAACACGTGCAATCGCACGCGCAAATGCAGACGCAGAACGAGGAATCGTGGCCCATCACCGCTCCCCCGTCGGGCCAAATACAGCCTCCACCGTTGCCCAACCACCTCCAACTCCTCGCCACTTTTCCCGGCGCCTTGGCGCAGTACCTGCCCGTGCCCCCTTTCCCCATCCCGGATTCCGGCTCGATCGCGAGAGGCGCCGGTTTAGGACCAACGCCGGTGAGGATCTTCAACCCGGACGCGTACTGCGATCTGTGCAACAAAGAGTTCTGCAACAAGTATTTCCTCAAGACGCACAAGGCGAACAAGCACGGTATCTACGCGGATTCGCCCGGGCCGAGCAACGTGGTGGACAACGCAAATCCGGGACCCGTGTTCCCCGTCAACTTGCCGAGTAGCGTGGTCAAATTGGAACTCGCCGCGACACCACCCGCGCCGACGGTGGCGTGCGACCTTTGCCAGAAGCGGTTCAAGAACGAGGAGTCGGTTCGCAAGCACAAGCAGAAAATGCACGCCGAGTTGTCGGACCAGTCGCAGGAGGGGCAGATCGGTTTGCTGCAGAACGAGGAGGACAGGGGGGAGGCATCGAGAGACAGCATGGGCGGTATGGAGACGTTGTTGAGGCAAGAGTACGGGATCGAGCAGGAGGACGCGACGTTCGTGCCGGCGCCCAGACACCTATCCCCCCAATCGATTCAACAAGCGCGCGACTCCGGGTTTAGCGCCGATCGGCTTCGTCGTTTAGGGGTCATCAATCCGGACGCGTTCTGCGAGATATGCTGCAAGGAGTACTGTAACAAGTATTTCCTACGAACGCACAAAATGAAGAGGCACGGCATCATCGTTCAGGACAGCGAAAGATCGCCCACGAATCCGGCGATGCCGGCAAGTTGGCATCAGGTGCAGACCAGCCCGTTGAATTTGATCATGGCGGAGAACAACGTGGGCGGGGAATCGAGCGAGCGTGGCGGCGACGATTACGAGTGCAAAGCGTGCGGGATACGTTTCCAAACGATCGGCCTGTATCGAGCGCATTCCCGGAAAATGCACGAAGGGGAGATGCAGGAGTCGCCCGGTCGGCAAGAGTGCGAGCTGGATACGGCCAGCAGCGATCAGCGGAACGATTCCATCTCGGAGGATCTTCAAAAATTGCAGACCATGCTTCTGCAACTGAACGGGCTCAAGTCTGGTAAAGGGTTGTCGTGCAGCGTGTGCGGCAAGGAGTGCGAGTCTCGAGCGGGTCTGCACATTCATACGATAACGGAGCACGCAGCCATTGGCGAAGATTCGACGTCCTCGCCGCAAGAGAAGTCGCCCTTAACCGCGACGTCCGCGTTCTCCGCTCTATCGTGCGGGAAAGAGTACGCGAGCCAGGATAGCCTGAGAAAGCACGAGGAGCATCAGCCGGCGATCTCGAGTGGCGTCCCGCAAATTGTCGTCGCGACAACCTCGGCGACGAGCGGTACGAATACGACGAGCCAGGCACCGGCCGAGAGGAAAGTGACGTCGATGACGCCCACGTCGAGCTACTGCGAGATATGCAACAAGGAATTATGCAATAAGTATTTTATGAAGACGCACATGCAGAGGATGCACGGTATCGAGATCGAGAACGGGGCCCAGATAGGAGGCGTGATATGCAACATTTGTAACAAAGAGCTGTGCAGCAAGTACTTTTTACGCGTCCACAAGCACAACACGCATGGCATAGTCGATGAGAATACGGCGAGCACGGTGAAACAGGAGAGCCACGAAACGGCGAGCGCGGACGACGCCGCTTTGAAGCCGGAACAACTCGGTGATTTGACCCACAGATATTTCACCCATTTCACAGAGGTTTGCCCGATCTGCAGCAGAAGGTTCCGTAGCATAAAGTGGCTCAAGGCTCATCTGATGGGCGATCACGGGAAGACGGGTATCGAGAAGTGGCGCGAGATGGAGCAACAGTATCAAACCAGTGTCCCCAAGTCGGGGAGCAGGGCGGTGAACATGACTTCGAAGGCCGGTCAACCGGGCTCCAACTTGAAGATACCGAACGGGTTCGAGATCTCGCAGCAAATCAAGTCCGCCCCCGATTACGCGGGTTTGGGTAATCAAGTGTTGTCCAATCTGCTGGGATCATCTTCCGAGGATCAACAATCGAAGAGTTACCGTTGCTCCTATTGCAATTTCACCACCACCGTACTacctttcctcttccttcacGAGAGATCTCACGGGCGGGACAACACGGAGGCTGAGAAATCGCTTCGATGCCCGATCTGCTCCCAACCGTTTCACCAGCCCGAGATGTTGCATCAGCATCTACTCGCGTCCCACCAATTCCCCACCTTGCTCCCCCATTTCCAACCCCCCctcttcaataatttaaacctCGACGCGGAGAGACCGACGAACGAGAGCAAGGAGAGATTCGACTCGGAGGCGAAGGAGGATCGTACGGGGAACAGCCCGCAGGTGGTCGTTAATCAAAACATTCCCGACCCGACGAGGGGCAAACGGCAGGACGAGACCACTGTCCAAGTCACTCCTCAGGGTGTGTACAAGTGCGCGCAGTGCGGATACGCGACGACCAATTTGAACAGGATAAAGAGGCACGTGAGGAAGGATCACAGAACGATCGGCGATCCTACGGACAGCGTGCTCGCCGAGCTGAGCAGAACTTTGAAGGACGTCGCGAACAGGCACAAGGTGCCTGCCTGTTACGCGATGCCCCAGGACTCGATGAATTCGATCGCCGAGAAGACGATCATGCAACCGTTCCTGATCGAGGAACGGGACGCGATGCAGGCCGGCGAGGAATCGAGCTCCGAGAAACGATTCGCCCCGGCTTTGGTCTACTTGCCCGTTAAATCGCGAATTAACAACGCGCTCACCGCATCCTTCACCCTAAGCCCAGCTTGA
Protein Sequence: MAHEATISDLTELDSDGSSCGERDARKRLLRFDVDRATGPKKRRKQTTPVRFSSTLMPGVHEESNEDEDEDEEGSEGKLSSQSPNHPSRSSIRDENLNNEFRCQYCSQFFDRKETLNVHLDNEHGSIANSISGQRCPSSRSPPDRAIKQEPSHQLDQSENPVNLLSVKNFAINWLATGQHVQSHAQMQTQNEESWPITAPPSGQIQPPPLPNHLQLLATFPGALAQYLPVPPFPIPDSGSIARGAGLGPTPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYADSPGPSNVVDNANPGPVFPVNLPSSVVKLELAATPPAPTVACDLCQKRFKNEESVRKHKQKMHAELSDQSQEGQIGLLQNEEDRGEASRDSMGGMETLLRQEYGIEQEDATFVPAPRHLSPQSIQQARDSGFSADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIIVQDSERSPTNPAMPASWHQVQTSPLNLIMAENNVGGESSERGGDDYECKACGIRFQTIGLYRAHSRKMHEGEMQESPGRQECELDTASSDQRNDSISEDLQKLQTMLLQLNGLKSGKGLSCSVCGKECESRAGLHIHTITEHAAIGEDSTSSPQEKSPLTATSAFSALSCGKEYASQDSLRKHEEHQPAISSGVPQIVVATTSATSGTNTTSQAPAERKVTSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTASTVKQESHETASADDAALKPEQLGDLTHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKTGIEKWREMEQQYQTSVPKSGSRAVNMTSKAGQPGSNLKIPNGFEISQQIKSAPDYAGLGNQVLSNLLGSSSEDQQSKSYRCSYCNFTTTVLPFLFLHERSHGRDNTEAEKSLRCPICSQPFHQPEMLHQHLLASHQFPTLLPHFQPPLFNNLNLDAERPTNESKERFDSEAKEDRTGNSPQVVVNQNIPDPTRGKRQDETTVQVTPQGVYKCAQCGYATTNLNRIKRHVRKDHRTIGDPTDSVLAELSRTLKDVANRHKVPACYAMPQDSMNSIAEKTIMQPFLIEERDAMQAGEESSSEKRFAPALVYLPVKSRINNALTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_00140817;
80% Identity: -