Basic Information

Insect: Bombus waltoni
Gene Symbol: -
Assembly: GCA_014737395.1
Location: JACXII010000022.1:16349-19723[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0017 0.13 12.6 2.8 1 23 98 121 98 121 0.93

2 13 0.0088 0.69 10.4 4.6 2 23 247 269 247 269 0.91

3 13 0.00013 0.011 16.1 2.0 3 23 314 335 313 335 0.96

4 13 4.9 3.9e+02 1.7 7.6 3 23 420 441 419 441 0.95

5 13 0.021 1.7 9.2 1.8 1 23 490 513 490 513 0.91

6 13 0.00016 0.012 15.9 0.9 2 23 561 583 560 583 0.96

7 13 0.0009 0.071 13.5 0.1 3 22 607 626 605 628 0.89

8 13 0.0064 0.51 10.8 3.6 2 23 670 692 669 692 0.96

9 13 0.012 0.92 10.0 2.4 3 23 707 728 705 728 0.94

10 13 0.0003 0.023 15.0 0.5 2 23 773 795 773 795 0.94

11 13 0.041 3.2 8.3 1.6 1 23 875 897 875 897 0.98

12 13 0.0006 0.047 14.0 1.3 2 23 910 932 909 932 0.96

13 13 0.0057 0.45 10.9 0.8 1 23 1006 1029 1006 1029 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0017	0.13	12.6	2.8	1	23	98	121	98	121	0.93
2	13	0.0088	0.69	10.4	4.6	2	23	247	269	247	269	0.91
3	13	0.00013	0.011	16.1	2.0	3	23	314	335	313	335	0.96
4	13	4.9	3.9e+02	1.7	7.6	3	23	420	441	419	441	0.95
5	13	0.021	1.7	9.2	1.8	1	23	490	513	490	513	0.91
6	13	0.00016	0.012	15.9	0.9	2	23	561	583	560	583	0.96
7	13	0.0009	0.071	13.5	0.1	3	22	607	626	605	628	0.89
8	13	0.0064	0.51	10.8	3.6	2	23	670	692	669	692	0.96
9	13	0.012	0.92	10.0	2.4	3	23	707	728	705	728	0.94
10	13	0.0003	0.023	15.0	0.5	2	23	773	795	773	795	0.94
11	13	0.041	3.2	8.3	1.6	1	23	875	897	875	897	0.98
12	13	0.0006	0.047	14.0	1.3	2	23	910	932	909	932	0.96
13	13	0.0057	0.45	10.9	0.8	1	23	1006	1029	1006	1029	0.98

Sequence Information

Coding Sequence: ATGGCGCACGAGACGACGACGACATCGGAATTGACGGAATTGGACAGCGACGGATCGAGTTGCGGAGAACGCGACGCGAGGAAACGTCTTCGTTTCGACGTGGATTCAACAGGGCCAAAGAAGAGACGAAAACAAACGACGCCCGTGAGATTCTCCTCGTCGTTGATGCCCGGTGTGCACGAAGAATCGAACGAGGACGAGAACGAGGACGAAGACAGCGAAGGTAAGCTGTCGTCGCAATCACCCATACCGAGTCAATCATCGATAAGAGACGAGAACCTGAATAACGAATTCCATTGCAAATATTGTAGTCAGTTTTTCGATAGCAAGGAAACGTTGAACGTTCACCTCGACAATGAACACGGTTCCGCGAATCAGATTTCCGAACAAAGTCAAAGTAGATCTCCGAGTTCCGCGATCAAGCAAGAACCGTCTCAGCAATTGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTAAAGAACATCGCGATAAACTGGCTAGCCACCGGGCAACACGTGCAATCGCAAGCACAAATGCAGACGCAGAACGAGGAATCCTGGCCCGGGCCAGCGAGTCAAATTCCACCGTTGCCCAACCACCTGCAAATCCTTTCTGGCTTTCCTGGCGCCTTGGCGCAGTATTTACCTATGCCCGCGTTCCCATTGACGGACTCGGGTTCCATCGCCAGGCCCTCGTTAGGACCAACGCCGGTCAGAATCTTTAATCCGGACGCGTACTGTGATCTGTGCAATAAAGAATTCTGCAACAAGTATTTCCTCAAGACACACAAAGCGAACAAGCACGGTATCTACGTCGATTCACCGGGACCCAGCACCGTCGACAATAGCATTCCAGGACCATTGTTCCCTACCAGCTATCCTAGTAACATGGTTAAGCTAGAACTGCCCGCAACACCGCCTACACCAACCGTCGCGTGTGATCTCTGCCAGAAACGTTTCAAAAACGAGGAGTCGTTGCGTAAACACAAACAAAAGATGCACGCCGACTTATTGGATCAGTCGCAAGAGTCTCAGATCAATCTGTCGCAAAACGAAGAGGACAGGGATACCTCGAGAGATAGTCTCGGCGGTATGGAAACGCTGTTTAAGCAAGAATACGGGATAGAACAGGAGGATGCAACGTTCGTACCAGCACCCAGACACCTATCGCCTCAATCGATTCAACAGGCACGAGAGTCTGGTTTCAGCGCCGATCGACTTCGTCGTTTAGGGGTTATAAATCCAGACGCGTTTTGCGAGATATGCTGTAAAGAATACTGTAACAAGTACTTCCTACGGACGCATAAAATGAAGAGGCACGGTATCGTCGTTCAGGACAGCGAAAGATCGCCTAGCAATCCAGGGACAGTGTCCAGTTGGCATCAAGTGCAGACCAGCCCGTTAAATCTGATCGTGACGGAAAACCCTGGTAGCACGGAATCGAACGATCGAGTCATCGACGATTACGAGTGCAAGCTATGTGGCATGCGTTTCCAGACGATCGACCTGTATCAAGCTCACTGCCGGAATATGCACGAGAGCGAGGAACAACAGTCGCCTAGGCAAGAGTCCGAGCTGGATATATCCGATCAACGGAACGATTCGATCTCGGAGGATCTTCAAAAATTGCAGACGATGCTGTTGCAACTGAACGGACTCAAGCCTACCAAGGGATTATCGTGCAACGTATGCGGAAAAGAATGCGAGACCAGAGCAGCGTTGCATATTCATATGATAACGGAGCACGGCGCCATCCAAGAAGACTCAACATCCTCGCCGCAAGGAAAGTCACCCTTAACCACGATCTCGACGTTCTGCGCCCTATGTGGAAAAGATTACGCGAGTCAGGACGCTCTCAGAAAACATATCGTCGACGAACATCAACCAGCGGCTTCGAATACCATTCCTCACACTCCTACAACCACAGCGGCGACGACCAATTCGAATTCGACCAGCCAAACTCCGACGGAGAGAAAGGTAACGTCGATGATGCCAACGTCGAGCTATTGCGAGATATGCAACAAGGAATTATGTAATAAGTACTTCATGAAGACTCATATGCAAAGAATGCACGGTATTGAGATTGAAAATGGAACTCATATCGGGGGTGTGATATGCAATATTTGCAACAAAGAGCTGTGCAGCAAGTACTTTTTACGCGTTCACAAGAACAACACTCATGGCATAGTCGACGAAAATACTCCCAGTTCGGTAAAACAAGAGACCCAAGAAGCAGCAAACGTGGACGATGCTGCGTTGAAGCCGGAGCAACTCGGTGACCTGACTCACAGATATTTCACCCACTTTACAGAGGTTTGCTCGTTCTGTGGCAGAAGGTTCCGTAGTATAAAGTGGTTAAAGGCTCATCTGTTGAACGATCATGGGAAAGTAGGTATCGATAAATGGCGCGAGATAGAGCAACAGTATCAAATAATGCCGAAATCAGGGAATAGAGCGGCGAATGTAACATCGAAGAACCCTCAACAGAGTTCGAATTTGAAGATACCGAATGGATTTGAAATCTCACAGCAACTTAAGTCTGCCGACTACACTGGTTTGGGTAATCAAGTTCTGTCAAATTTACTGGGCTCATCTTCCGAAGATCAACAATTGAAAAACTACCGCTGTTCCTATTGCAATTTCACGACCACCGTGTTACCGTTTCTCTTCCTTCACGAGAGGTCTCACGTGAATTCCCGTGACAACGAAGGAGAGAAATCGCTTCAATGTCCGATTTGCTCCCAAGGTTTTCATCAGCCGGAAATGTTACATCAACACCTCCTCACGTCGCACCAATTTCCCACGTTGCTGCCCCATTTTCAACCCCCCGTGCTTAATAATTTAGGTCTGGACGCGGAGAAATTGAACGAAGCCAAAGAGAAACTCGATCTGGAAGCGAAGGTGGACCATGCAAGGAACAGTCCGCAAGCTACCATCAATCAAAATATTCCCGAACCGATGAGAAACAAACGACAGGACGAAACGGCGGTCCAAGTTACTCCTCATGGCGTGTATAAGTGCGCGCAGTGCGGTTACGCGACGACCAATTTAAATAGGATTAAGAAGCACGTGAGAAAAGATCACAAAACGATCAGCGATCCTACCGATAGCGTGCTCGCCGAGCTTAGCAAAACTTTGAAAGACGTTGCCAACAAGCACAAGGTGCCAGCTTGCTACGCAACGCCGCAGGATATGAATTCCAATCCTGACAGAACGATCATGCAGCCGTTTTTAATCGAGGAACAGGATACGATGCAAGCCGGAGAGGAATCCAGCTCGGAGAAACGGTTCGCGCCGGCTTTGGTCTATCTGCCGGTTAAATCGCGAATCAACAACGCGCTCACTGCATCCTTCACTCTCAGTCCTGCTTGA
Protein Sequence: MAHETTTTSELTELDSDGSSCGERDARKRLRFDVDSTGPKKRRKQTTPVRFSSSLMPGVHEESNEDENEDEDSEGKLSSQSPIPSQSSIRDENLNNEFHCKYCSQFFDSKETLNVHLDNEHGSANQISEQSQSRSPSSAIKQEPSQQLDQSENPVNLLSVKNIAINWLATGQHVQSQAQMQTQNEESWPGPASQIPPLPNHLQILSGFPGALAQYLPMPAFPLTDSGSIARPSLGPTPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSTVDNSIPGPLFPTSYPSNMVKLELPATPPTPTVACDLCQKRFKNEESLRKHKQKMHADLLDQSQESQINLSQNEEDRDTSRDSLGGMETLFKQEYGIEQEDATFVPAPRHLSPQSIQQARESGFSADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIVVQDSERSPSNPGTVSSWHQVQTSPLNLIVTENPGSTESNDRVIDDYECKLCGMRFQTIDLYQAHCRNMHESEEQQSPRQESELDISDQRNDSISEDLQKLQTMLLQLNGLKPTKGLSCNVCGKECETRAALHIHMITEHGAIQEDSTSSPQGKSPLTTISTFCALCGKDYASQDALRKHIVDEHQPAASNTIPHTPTTTAATTNSNSTSQTPTERKVTSMMPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGTHIGGVICNICNKELCSKYFLRVHKNNTHGIVDENTPSSVKQETQEAANVDDAALKPEQLGDLTHRYFTHFTEVCSFCGRRFRSIKWLKAHLLNDHGKVGIDKWREIEQQYQIMPKSGNRAANVTSKNPQQSSNLKIPNGFEISQQLKSADYTGLGNQVLSNLLGSSSEDQQLKNYRCSYCNFTTTVLPFLFLHERSHVNSRDNEGEKSLQCPICSQGFHQPEMLHQHLLTSHQFPTLLPHFQPPVLNNLGLDAEKLNEAKEKLDLEAKVDHARNSPQATINQNIPEPMRNKRQDETAVQVTPHGVYKCAQCGYATTNLNRIKKHVRKDHKTISDPTDSVLAELSKTLKDVANKHKVPACYATPQDMNSNPDRTIMQPFLIEEQDTMQAGEESSSEKRFAPALVYLPVKSRINNALTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_00226817;
80% Identity: -