Basic Information

Insect: Tetragonula clypearis
Gene Symbol: -
Assembly: GCA_010645135.1
Location: WIUT01001563.1:3802-7221[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00024 0.039 15.2 1.5 1 23 105 128 105 128 0.94

2 13 0.0085 1.4 10.3 4.6 2 23 252 274 252 274 0.91

3 13 0.0012 0.19 13.0 4.1 3 23 319 340 318 340 0.96

4 13 4.8 7.6e+02 1.7 7.6 3 23 426 447 425 447 0.95

5 13 0.072 12 7.4 1.9 1 23 500 523 500 523 0.94

6 13 0.00039 0.062 14.6 0.2 2 23 571 593 570 593 0.96

7 13 0.00062 0.099 13.9 0.1 3 23 618 639 617 639 0.91

8 13 0.0063 1 10.8 3.6 2 23 681 703 680 703 0.96

9 13 0.085 14 7.2 4.2 3 23 718 739 716 739 0.92

10 13 0.00021 0.034 15.4 0.1 2 23 784 806 784 806 0.94

11 13 0.039 6.3 8.2 1.6 1 23 887 909 887 909 0.98

12 13 0.00058 0.093 14.0 1.3 2 23 923 945 922 945 0.96

13 13 0.0055 0.88 10.9 0.8 1 23 1021 1044 1021 1044 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00024	0.039	15.2	1.5	1	23	105	128	105	128	0.94
2	13	0.0085	1.4	10.3	4.6	2	23	252	274	252	274	0.91
3	13	0.0012	0.19	13.0	4.1	3	23	319	340	318	340	0.96
4	13	4.8	7.6e+02	1.7	7.6	3	23	426	447	425	447	0.95
5	13	0.072	12	7.4	1.9	1	23	500	523	500	523	0.94
6	13	0.00039	0.062	14.6	0.2	2	23	571	593	570	593	0.96
7	13	0.00062	0.099	13.9	0.1	3	23	618	639	617	639	0.91
8	13	0.0063	1	10.8	3.6	2	23	681	703	680	703	0.96
9	13	0.085	14	7.2	4.2	3	23	718	739	716	739	0.92
10	13	0.00021	0.034	15.4	0.1	2	23	784	806	784	806	0.94
11	13	0.039	6.3	8.2	1.6	1	23	887	909	887	909	0.98
12	13	0.00058	0.093	14.0	1.3	2	23	923	945	922	945	0.96
13	13	0.0055	0.88	10.9	0.8	1	23	1021	1044	1021	1044	0.98

Sequence Information

Coding Sequence: ATGTCCTCAACGATGGCGCACGAGGCGACGATATCGGAGTTGACGGAATTGGACAGCGACGGATCGAGTTGCGGTGAACGCGACGCGAGGAAACGTCTCCGTTTCGACGTGGATTCGACCGGGCCGAAGAAGAGGCGAAAACAAACGACGCCCGTGAGATTCTCCTCGACGTTGGTCCCTGGCGTGCACGAGGAATCGAACGAGGACGAgaacgaggacgaggacgaggacgaggacagCGAAGGTAAGCTGTCGTCGCAATCACCGGTGCCGTGTCAATCGTCGATAAGGGACGAGAACCTGAATAACGATTTCCGTTGCAAATACTGTAGTCAGTTTTTCGACAGCAAAGAAACGCTGAACGTTCACCTCGACAATGAGCACGGCTCCGCGAGTCAGAGTCGAAATAGGTCCCCGAATCTCGCGGTCAAACAAGAATCGTCACAGCAGCTGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTGAAGGACTTCGCGATAAATTGGCTAGCCAGCGGGCAACACGTGCAATCGCACAATGCACAAATGCAGACGCAGAACGAGGAAGCCTGGATGCCCGGATCAGTTAATCAAATCCCATCGTTACCCAATCACTTGCAAATCCTTTCTGGCTTTCCTAGCGCGTTGGCGCAATATTTACCAGTGCCCGGGTTCCCGTTAACAGATTCCGGTTCCATGGTGAAACCGTCGTTAGGACCAACGCCGGTCAGGATCTTTAATCCAGAAGCGTACTGTGATCTGTGCAATAAAGAATTCTGCAACAAGTATTTCCTCAAGACGCACAAAGCGAACAAGCACGGTATCTACGCCGACTCGCCGGGACCTAGCACCCAGGACAATAGCATTCCAGGGCCATTGTTCCCTACCAACTATTCTAGTAACGTGATTAAGCTGGAACTACCGCCTACGCCGCCTACGCCGACCGTCGCGTGCGATCTCTGTCACAAGCGTTTCAAGAACGAGGATTCGATGCGTAAACACAAGCAAAAGATGCACACCGAGCTGCTGGATCAGTCGCAGGAGTCGCAGTCCGTCAATTTGTCGCAAAACGAGGAGGACAGGGACACCCCGAGGGACAGTCTCGGTGGTATGGAGACGTTGTTCAAACAGGAATACGGGATAGAGCAGGAGGACGCAACGTTCGTACCAGCGCCCAGGCATCTATCGCCTCAATCGATTCAGCAGGCTCGGGACTCGGGTTTCAGCGCCGATCGGCTTCGTCGTTTGGGAGTTATAAACCCGGAGGCGTTCTGCGAGATATGCTGCAAAGAGTATTGCAACAAGTACTTCCTGCGAACGCACAAAATGAAGAGGCACGGGATCGTCGTACACGACAACGAGAGATCACCACCGAGCAATCCAGGAGCGGCGCCCAGCTGGCATCAAGTGCAGACCAGCCCGTTGAATCTGATCGTGACGGAGTCGAATTCTGGTAGCACGgagtcgaacgaacgagcagCCGGCGACTCCGATTACGAGTGCAAGTCGTGCGGCATACGTTTCCAGACGATTGGCCTGTATCAAGCTCACTGTCGGAAGATGCACGAGAGCGAGGAGCAGCAGTCGCCCAGGCCAGACTGCGAGTTGGACGCGGCCGATCaacgaaacgattcgatcTCGGAGGATCTTCAGAAATTGCAGACGATGCTGTTGCAGTTGAACGGGCTTAAGTCTAGCAAGGGGTTATCGTGCAACGTGTGCGGAAAAGAATCCGAGACCAGAGCTGCGTTGCATATTCATATGATAACGGAGCACGGAGCTGCTAGCCAAGAAGATCCAACGTCCTCGCCGCAAGGAACATCACCCTTAACCACGAACGTCGCGTTCTGCGCCCTCTGCGGCAAAGATTACGCGAGCCAAGACGCACTCAGGAAGCACATCGCCGACGAACATCAACAACCACCGATTTCGAATGCCAGCGTTCCTCACGCTCCTACGGCGACCACGACCAATACAAATTCGTCCAGCCAGACTCCGACGGAGAGGAAAGTCACGTCGATGACGCCCACGTCCAGCTACTGCGAGATATGCAACAAGGAGTTGTGCAACAAGTACTTCATGAAGACGCACATGCAAAGAATGCACGGCATTGAGATCGAAAACGGAGCCCAGATCGGAGGCGTGATATGCAACATTTGCAACAAGGAGCTGTGCAGCAAGTACTTTCTGCGCGTTCACAAGCACAACACCCACGGCATAGTCGATGAAAATACTGCCAGTTCGGTGAAACAAGAGGCCCACGAAACAACGAGTGCGGACGATGCTGCTTTGAAGCCGGAACAGCTCGGTGACCTGAGTCACAGATACTTCACTCACTTCACAGAGGTTTGCCCGATCTGTAGCAGAAGGTTCCGTAGTATAAAGTGGTTGAAGGCACACCTGATGGGTGATCATGGGAAAACGGGTGTCGACAAATGGCGCGAAATGGAGCAACAGTATCAAACGATGCCGAAATCGGCGAACAGAGCGGTAAATATGACATCGAAGAACGCTCAACAGAGCTCGAATCTGAAGATACCGAATGGATTTGAAATGTCGCAACACCTCAAGTCCACCGACTACACTGGTTTCGGTAATCAAGTTCTGTCGAATTTACTAGGCTCGTCTACGGAAGCAGATCAGCAGGTGAAAAGCTATCGTTGCTCCTACTGCAATTTCACGACCACCGTGCTGCCATTCCTCTTTCTTCACGAGAGGTCTCACGTCATTTCGCACGACAACGTCGAAGGAGAAAAATCGCTGCAATGCCCGATCTGCTCGCAAGGTTTTCATCAGCCGGAGATGCTGCATCAGCATCTGCTCACGTCGCACCAGTTCCCCACTTTGCTCCCCCATTTCCAACCCCCTCTGTTTAACAGTCTAAGCCTGGACGTGGAAAAGTTGAAcgaagcgaaagagaaactCGACGTAGAGGCAAAGGAGGATCGCATCGAGAACAGTTCGCAAGCCATTGCCAGCCAGCAACATATTCCCGATCCGGCGAGAAACAAACGACAGGCGGACGAAACGGCGGTGCAAGTCACGCCTCACGGTGTGTATAAATGCGCGCAGTGCGGCTACGCGACGACCAATTTGAACAGGATCAAAAAACACGTGAGGAAAGATCACAGAACGATCAGCGATCCTACCGACAGCGTGCTCGCCGAGCTCAGCAGAACTTTGAAAGACGTTGCCAACAAGCACAAGGTGCCAGCTTGCTACGCCACGCCGCAGGACATGAATTCGAATCCTGACAAGACGATCATGCAGCCGTTTCTAATCGAGGAACAGGACACGATGCAAGCTGGAGAGGAGTCCAGCTCGGAGAGACGATTCGCGCCGGCTTTGGTCTACTTGCCGGTTAAGTCGCGAATCAACAACGCGTTCACCGCGTCCTTCACCCTCAGTCCTGCTTGA
Protein Sequence: MSSTMAHEATISELTELDSDGSSCGERDARKRLRFDVDSTGPKKRRKQTTPVRFSSTLVPGVHEESNEDENEDEDEDEDSEGKLSSQSPVPCQSSIRDENLNNDFRCKYCSQFFDSKETLNVHLDNEHGSASQSRNRSPNLAVKQESSQQLDQSENPVNLLSVKDFAINWLASGQHVQSHNAQMQTQNEEAWMPGSVNQIPSLPNHLQILSGFPSALAQYLPVPGFPLTDSGSMVKPSLGPTPVRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYADSPGPSTQDNSIPGPLFPTNYSSNVIKLELPPTPPTPTVACDLCHKRFKNEDSMRKHKQKMHTELLDQSQESQSVNLSQNEEDRDTPRDSLGGMETLFKQEYGIEQEDATFVPAPRHLSPQSIQQARDSGFSADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVVHDNERSPPSNPGAAPSWHQVQTSPLNLIVTESNSGSTESNERAAGDSDYECKSCGIRFQTIGLYQAHCRKMHESEEQQSPRPDCELDAADQRNDSISEDLQKLQTMLLQLNGLKSSKGLSCNVCGKESETRAALHIHMITEHGAASQEDPTSSPQGTSPLTTNVAFCALCGKDYASQDALRKHIADEHQQPPISNASVPHAPTATTTNTNSSSQTPTERKVTSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTASSVKQEAHETTSADDAALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKTGVDKWREMEQQYQTMPKSANRAVNMTSKNAQQSSNLKIPNGFEMSQHLKSTDYTGFGNQVLSNLLGSSTEADQQVKSYRCSYCNFTTTVLPFLFLHERSHVISHDNVEGEKSLQCPICSQGFHQPEMLHQHLLTSHQFPTLLPHFQPPLFNSLSLDVEKLNEAKEKLDVEAKEDRIENSSQAIASQQHIPDPARNKRQADETAVQVTPHGVYKCAQCGYATTNLNRIKKHVRKDHRTISDPTDSVLAELSRTLKDVANKHKVPACYATPQDMNSNPDKTIMQPFLIEEQDTMQAGEESSSERRFAPALVYLPVKSRINNAFTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_01417927;
80% Identity: -