Basic Information

Insect: Bombus ignitus
Gene Symbol: -
Assembly: GCA_014825875.1
Location: CM026144.1:9703978-9707364[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00018 0.019 15.7 1.5 1 23 102 125 102 125 0.95

2 13 0.0089 0.94 10.3 4.6 2 23 251 273 251 273 0.91

3 13 0.00099 0.1 13.3 2.1 3 23 318 339 317 339 0.96

4 13 5 5.3e+02 1.7 7.6 3 23 424 445 423 445 0.95

5 13 0.00023 0.024 15.3 0.7 1 23 494 517 494 517 0.98

6 13 0.00016 0.017 15.9 0.9 2 23 565 587 564 587 0.96

7 13 0.00064 0.068 13.9 0.1 3 23 611 632 610 632 0.91

8 13 0.0065 0.69 10.8 3.6 2 23 674 696 673 696 0.96

9 13 0.088 9.3 7.2 4.2 3 23 711 732 709 732 0.92

10 13 0.00022 0.024 15.4 0.1 2 23 777 799 777 799 0.94

11 13 0.041 4.3 8.3 1.6 1 23 879 901 879 901 0.98

12 13 0.0006 0.064 14.0 1.3 2 23 914 936 913 936 0.96

13 13 0.0058 0.61 10.9 0.8 1 23 1010 1033 1010 1033 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00018	0.019	15.7	1.5	1	23	102	125	102	125	0.95
2	13	0.0089	0.94	10.3	4.6	2	23	251	273	251	273	0.91
3	13	0.00099	0.1	13.3	2.1	3	23	318	339	317	339	0.96
4	13	5	5.3e+02	1.7	7.6	3	23	424	445	423	445	0.95
5	13	0.00023	0.024	15.3	0.7	1	23	494	517	494	517	0.98
6	13	0.00016	0.017	15.9	0.9	2	23	565	587	564	587	0.96
7	13	0.00064	0.068	13.9	0.1	3	23	611	632	610	632	0.91
8	13	0.0065	0.69	10.8	3.6	2	23	674	696	673	696	0.96
9	13	0.088	9.3	7.2	4.2	3	23	711	732	709	732	0.92
10	13	0.00022	0.024	15.4	0.1	2	23	777	799	777	799	0.94
11	13	0.041	4.3	8.3	1.6	1	23	879	901	879	901	0.98
12	13	0.0006	0.064	14.0	1.3	2	23	914	936	913	936	0.96
13	13	0.0058	0.61	10.9	0.8	1	23	1010	1033	1010	1033	0.98

Sequence Information

Coding Sequence: ATGTCCTCGACGATGGCGCATGAGACGACGACGATATCGGAATTGACGGAATTGGACAGCGATGGATCGAGTTGCGGAGAACGCGACGCGAGGAAACGTCTTCGTTTCGACGCGGACTCAACAGGGCCGAAGAAGAGACGAAAACAAACGACGCCCGTAAGATTCTCCTCGACGTTAATGCCCGGTGTGCACGAAGAATCGAACGAGGACGAGGAAGAGGACGAGGACAGCGAAGGTAAGCTGTCGTCGCAATCACCCATACCGAGTCAATCATCGATAAGAGACGAGAACTTGAATAACGAATTCCGTTGCAAATATTGTAGTCAGTTTTTCGATAGCAAGGAAACGTTGAACGTTCACCTCGAGAATGAGCACGGTTCCGCGAATCAGATTTCGGAACAAAGTCAAAGTAGATCTCCGAATTCCGCGATCAAACAAGAACCGTCTCAGCAACTGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTAAAGAACTTCGCGATAAACTGGCTAGCCACCGGGCAACACGTGCAATCGCAAGCACAAATGCAGACGCAGAACGAAGAATCCTGGCCCGGGCCAGCGAGTCAAATTCCACCTTTACCCAACCACTTGCAAATCCTTTCTGGCTTTCCTGGCACCTTGGCGCAGTATTTACCTATGCCCGCGTTCCCATTGACGGACTCCGGTTCTATCGCCAGGCCCTCGTTGGGACCAACGCCGGTCAGGATCTTTAATCCGGACGCGTACTGTGATCTGTGCAATAAAGAGTTCTGCAACAAGTATTTCCTCAAGACACACAAAGCGAACAAGCACGGTATCTACGTCGATTCACCGGGACCCAGCACCGTCGACAATAGCATTCCAGGACCATTGTTCCCTACCAACTATCCTAGTAACGTGGTTAAGCTAGAACTGCCCGCGACACCACCCACACCGACCGTCGCGTGTGATCTCTGCCAGAAACGTTTCAAAAACGAGGAATCGATGCGTAAACACAAACAAAAGATGCACGTTGAATCATTGGATCAATCGCAAGAGTCTCAGATCAATTTGTCGCAAAACGAAGAGGACAGGGATACGTCGAGAGATAGTCTCGGCGGTATGGAAGCGCTGTTTAAGCAAGAATACGGGATAGAACAAGAGGATGCAACGTTCGTACCAGCACCCAGACATCTATCGCCTCAATCGATTCAACAGGCACGAGAGTCTGGTTTCAGCGCCGATCGACTTCGTCGTTTAGGGGTTATAAATCCAGAAGCGTTTTGCGAGATATGTTGTAAAGAGTACTGTAATAAGTACTTCCTACGGACCCATAAAATGAAGAGGCACGGTATCATCATTCAGGACAACGAAAGATCGCCTAGCAATCCAGGGACAGCGGCCAGTTGGCATCAAGTGCAGACCAGTCCGTTAAATCTGATCGTGACGGAGAATCCTGGTAGCACAGAATCGAACGATCGAGTCGTCGACGATTACGAGTGCAAGTTATGTGGTATACGTTTCCAGACGATTGACCTGTATCAAGCTCACTATCGGAAGATGCACGAGAGCGAGGAACAACAATCGCCTAGGCAAGAGTGCGAGCTAGATATATCCGATCAACGGAACGATTCGATCTCGGAGGATCTTCAAAAATTGCAGACGATGCTGTTGCAACTGAACGGACTCAAGCCTACCAAGGGATTATCGTGCAACGTGTGCGGAAAAGAATGCGAGACCAGAGCAGCGTTGCATATTCATATGATAACGGAACACGGCGCCATCCAAGAAGATTCAACATCCTCGCCGCAAGAAAAGTCACCCTTAACTACAACCTCAGCGTTCTGCGCCCTATGTGGAAAAGATTACGCGAGTCAAGACGCTCTCAGGAAACATATCGCCGACGAACATCAACCAGCGGTTTCGAATACCATTCCTCAAACTCCTACGACCACAGCGACGACGACCAATTCGAATTCGACCAGCCAAACTCCAACCGAGAGAAAGGTAACGTCGATGACGCCAACGTCGAGCTATTGCGAGATATGTAACAAGGAATTATGCAATAAGTACTTCATGAAGACGCATATGCAGAGAATGCACGGTATTGAGATTGAAAATGGAGCCCAGATCGGTGGCGTAATATGCAACATTTGCAACAAGGAGCTGTGCAGCAAATACTTTTTACGCGTTCACAAGCACAACACTCATGGCATAGTCGACGAAAATACTCCCAGTTCGGTAAAACAAGAGACCCACGAGGCATCAAACGTGGACGATGCTGCTTTGAAACCGGAGCAACTCGGTGATCTCAGTCACAGATATTTCACCCACTTTACAGAGGTTTGTCCAATCTGTAGCAGAAGGTTCCGTAGTATAAAATGGTTAAAGGCTCACCTGATGGGTGATCATGGGAAAACAGGCATCGATAAATGGCGCGAGATGGAGCAACAATATCAAACAACGCCGAAATCAGGGAATAGAACAGCGAATGTAATATCGAAAAACCCTCAACAGAGCTCGAATTTGAAGATACCGAATGGATTTGAAATCTCACGGCAAATCAAATCTGCCGAGTACACTGGTTTGGGTAATCAAGTTTTGTCAAATTTACTAGGGTCATCTTCCGAAGATCAACAGATGAAAAGCTATCGTTGTTCCTATTGCAATTTCACGACCACCGTGTTACCGTTTCTCTTCCTTCACGAGAGGTCTCACGTGAATTCCCGTGACAACGAAGGAGAAAAATCACTTCAATGTCCGATTTGCTCCCAAGGTTTCCATCAGCCGGAAATGTTGCATCAGCATCTCCTCACGTCGCACCAATTTCCCACGTTGCTGCCTCATTTTCAACCCCCTGTGCTTAATAATTTAGGTCTGGACGCGGAGAAATTGAACGAGGCCAAAGAGAAATTCGATCTGGAAGCGAAGGAGGACCATACGAGGAACAGTCCACAAGTTACCACCAATCAAAATATTCCCGAACCGATGAGAAACAAACAACAGGACGAAACAGCGGTCCAAGTTACTCCTCATGGTGTATATAAGTGCGCACAGTGCGGTTACGCGACGACCAACTTAAATAGAATTAAGAAGCACGTGAGAAAAGATCACAAAACGATCAGCGATCCTACCGATAGTGTGCTCGCCGAGCTTAGCAGAACTTTGAAAGACGTTGCCAACAAACATAAGGTACCAGCTTGCTACGCAACGCCACAGGATATGAATTCCAATCCTGATAAAACGATCATGCAGCCATTTTTAATCGAAGAACAGGACACGATGCAAGCTGGAGAGGAATCCAGCTCGGAAAAACGGTTCGCGCCGGCTTTGGTCTATCTGCCGGTTAAATCGCGAATCAACAACGCGCTCACTGCATCCTTCACCCTCAGTCCTGCTTGA
Protein Sequence: MSSTMAHETTTISELTELDSDGSSCGERDARKRLRFDADSTGPKKRRKQTTPVRFSSTLMPGVHEESNEDEEEDEDSEGKLSSQSPIPSQSSIRDENLNNEFRCKYCSQFFDSKETLNVHLENEHGSANQISEQSQSRSPNSAIKQEPSQQLDQSENPVNLLSVKNFAINWLATGQHVQSQAQMQTQNEESWPGPASQIPPLPNHLQILSGFPGTLAQYLPMPAFPLTDSGSIARPSLGPTPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSTVDNSIPGPLFPTNYPSNVVKLELPATPPTPTVACDLCQKRFKNEESMRKHKQKMHVESLDQSQESQINLSQNEEDRDTSRDSLGGMEALFKQEYGIEQEDATFVPAPRHLSPQSIQQARESGFSADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIIIQDNERSPSNPGTAASWHQVQTSPLNLIVTENPGSTESNDRVVDDYECKLCGIRFQTIDLYQAHYRKMHESEEQQSPRQECELDISDQRNDSISEDLQKLQTMLLQLNGLKPTKGLSCNVCGKECETRAALHIHMITEHGAIQEDSTSSPQEKSPLTTTSAFCALCGKDYASQDALRKHIADEHQPAVSNTIPQTPTTTATTTNSNSTSQTPTERKVTSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTPSSVKQETHEASNVDDAALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKTGIDKWREMEQQYQTTPKSGNRTANVISKNPQQSSNLKIPNGFEISRQIKSAEYTGLGNQVLSNLLGSSSEDQQMKSYRCSYCNFTTTVLPFLFLHERSHVNSRDNEGEKSLQCPICSQGFHQPEMLHQHLLTSHQFPTLLPHFQPPVLNNLGLDAEKLNEAKEKFDLEAKEDHTRNSPQVTTNQNIPEPMRNKQQDETAVQVTPHGVYKCAQCGYATTNLNRIKKHVRKDHKTISDPTDSVLAELSRTLKDVANKHKVPACYATPQDMNSNPDKTIMQPFLIEEQDTMQAGEESSSEKRFAPALVYLPVKSRINNALTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_00226817;
80% Identity: -