Basic Information

Insect: Bombus picipes
Gene Symbol: -
Assembly: GCA_014737485.1
Location: JACXIP010000009.1:6302900-6306287[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.097 9.8 7.1 3.7 2 23 222 244 222 244 0.91

2 12 0.00096 0.096 13.4 2.1 3 23 289 310 288 310 0.96

3 12 4.8 4.8e+02 1.7 7.6 3 23 395 416 394 416 0.95

4 12 0.015 1.5 9.6 1.9 1 23 465 488 465 488 0.94

5 12 0.00019 0.019 15.6 1.5 2 23 536 558 535 558 0.96

6 12 0.00062 0.062 14.0 0.1 3 23 582 603 581 603 0.91

7 12 0.0063 0.63 10.8 3.6 2 23 645 667 644 667 0.96

8 12 0.085 8.5 7.3 4.2 3 23 682 703 680 703 0.92

9 12 8.1e-05 0.0081 16.8 0.1 2 23 748 770 748 770 0.94

10 12 0.04 4 8.3 1.6 1 23 850 872 850 872 0.98

11 12 0.00058 0.059 14.1 1.3 2 23 885 907 884 907 0.96

12 12 0.0056 0.56 11.0 0.8 1 23 981 1004 981 1004 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.097	9.8	7.1	3.7	2	23	222	244	222	244	0.91
2	12	0.00096	0.096	13.4	2.1	3	23	289	310	288	310	0.96
3	12	4.8	4.8e+02	1.7	7.6	3	23	395	416	394	416	0.95
4	12	0.015	1.5	9.6	1.9	1	23	465	488	465	488	0.94
5	12	0.00019	0.019	15.6	1.5	2	23	536	558	535	558	0.96
6	12	0.00062	0.062	14.0	0.1	3	23	582	603	581	603	0.91
7	12	0.0063	0.63	10.8	3.6	2	23	645	667	644	667	0.96
8	12	0.085	8.5	7.3	4.2	3	23	682	703	680	703	0.92
9	12	8.1e-05	0.0081	16.8	0.1	2	23	748	770	748	770	0.94
10	12	0.04	4	8.3	1.6	1	23	850	872	850	872	0.98
11	12	0.00058	0.059	14.1	1.3	2	23	885	907	884	907	0.96
12	12	0.0056	0.56	11.0	0.8	1	23	981	1004	981	1004	0.98

Sequence Information

Coding Sequence: ATGTCCTCGACGATGGCGCATGAGACGACGACGATATCGGAATTGACGGAATTGGACAGCGANCGGATCGAGTTGCGAAGAACGCGACGCGAAGAAACGTCTTCGTTTCGACGCGGATTCAACAGGGCCGAAGAAGAGACGAAAACAAACGACGCCCGTGAGATTCTCCTCGACGTTAATGCCCGGTGTGCACGAAGAATCGAACGAGGACGAGGAAGAAGACGAGGACAGCGAAGTCAGTTTTTCGATAGCAAGGTAACGTTGAACGTTCATCTCGACAATGAGCACGGTTCCGCGAATCAGATTTCGGAACAAAGTCAAAGAAGATCTCCGAATTCCGTGATCAAACAAGAACCGTCTCAGCAACAGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTAAAGAACTTCGCGATAAACTGGCTAGCCACCGGGCAACACGTGCAATCGCAAGCACAAATGCAGACGCAGAACGAAGAATCCTGGCCCGGGCCGGCGAGTCAAATTCCACCGTTACCCAACCACTTGCAAATCCTTTCTGGCTTTCCTGGCGCCTTGGCGCAGTATTTACCTATGCCCGCGTTCCCATTGACGGACTCCGGTTCTATCGCCAGGTCCTCGTTGGGACCAACGCCGATCAGGATCTTTAATCCGGACGCGTACTGTGATGTGTGCAATAAAGAGTTATGCAACAAGTATTTCCTCAAGACACACAAAGCGAACAAGCACGGTATCTACGTCGATTCACCGGGACCCAGCACCGTCGACAATAGCATTCCAGGACTATTGTTCCCTACCAACTATTCTAGTAACATGGATAAACTAGAACTGTCCGCGACACCACCTACACCGATTGTCGCGTGTGATCTCTGTCAGAAACGTTTCAAAAACGAGGAATCGATGCGTAAACACAAGCAAAAGATGCACGTTGAATTATTGGATCAGTCGCAAGAATCTCAGATCAATTTGTCGCAAAACGAAGAGGACAGGGATACGTCGAGGGATAGTCTTGGCGGTATAGAAACATTGTTTAAGCAAGAATACGGGATAGAACAAGAGGATGCAACGTTCGTACCAGCACCCAGACATCTATCGCCTCAATCGATTCAACAGGCACGAGAGTCTGGTTTCAGCGCCGATCGACTTCGTCGTTTAGGGGTTATAAATCCAGAAGCGTTTTGCGAGATATGTTGTAAAGAGTACTGTAATAAGTACTTCCTACGAACTCATAAAATGAAAAGGCACGGTATCATCGTTCAGGACAACGAAAGATCGCCTAGCATTCCAGGGACAGCGGCCACTTGGCATCAAGTGCAGACCAGTCCGTTAAATCTGATCGTGACGGAGAATCCTGGTAGCACAGAATCGAACGATCGAGTCGTCGACGATTACGAGTGCAAGTTATGTGGTATACGTTTCCAGACGATTGACCTGTATCAAGCTCACTGTCGGAAGATGCACGAGAGCGAGGAACAACAATCGCCTAGGCAAGAGTGCGAGCTAGATATATCCGATCAACGGAACGATTCGATCTCGGAGGATCTTCAAAAATTGCAGACGATGCTGTTGCAACTGAACGGACTCAAGCCTACCAAGGGATTGTCGTGCAACGTGTGCGGAAAAGAATGCGAGACCAGAGCAACGTTGCATATTCATATGATAACGGAACACGGCGCCATCCAAGAAGATTCAACATCCTCGCCGCAAGAAAAGTCACCCTTAACTACAACCTCAGCGTTCTGCGCCCTATGTGGAAAAGATTACGCGAGTCAGGACGCTCTCAGGAAACATATCGCCGACGAACATCAACCAGCGGTTTCGAATACCACTCCTCAAACTCCTACAACCACAGCGACGACGACCAATTCGAATTCGACCAGCCAAACTCCAACCGAGAGAAAGGTAACGTTGATGACGCCAACGTCGAGCTATTGCGAGATATGCAACAAGGAATTATGCAATAAGTACTTCATGAAGACGCATATGCAAAGAATGCACGGTATTGAGATTGAAAATGGAGCCCATATCGGTGGCGTGATATGCAACATTTGCAACAAAGAGCTGTGCAGCAAATACTTTTTACGCGTTCACAAGCACAACACTCATGGCGTAGTCGACGAAAATACTCCCAGTTCGGTAAAGCAAGAGACTAACGAGGCATCAAACGCGGACGATGCTGCTTTGAAGCCGGAGCAACTCGGTGATCTGAGTCACAGATATTTCACCCACTTTACAGAGGTTTGTCCAATCTGTAACAGAAGATTCCGTAGTATAAAGTGGTTAAAGGCTCACCTGATGGGTGATCATGGGAAAACAGGCATCGATAAATGGCGCGAGATGGAGCAACAATACCAAACAACGCCGAAATCAGGTAATAGAACAGCGAATGTAATATCGAAGAACCCTCAACAGAGCTCGAATTTGAAGATACCGAATGGATTTGAAATCTCACAGCAAATCAAGTCTGCCGACTACACTGGTTTGGGTAATCAAGTTCTGTCAAATTTACTGGGATCATCTTCCGAAGATCAACAATTGAAAAGCTATCGCTGTTCCTATTGCAATTTCACGACCACCGTGTTACCGTTTCTCTTCCTTCACGAGAGGTCTCACGTGAATTCCCGTGACAACGAAGGAGAGAAATCGCTTCAATGTCCGATTTGCTCCCAAGGTTTCCATCAGCCGGAAATGTTGCATCAGCATCTCCTCACGTCGCACCAATTTCCCACGTTGCTGCCTCATTTTCAACCCTCTGTGCTTAATAATTTAGGTGTAGACGCGGAGAAATTGAACGAGGCCAAAGAGAAACTCGATCTAGAAGCGAAGGAGGACCATACGAGGAAGAGTCCACAAGTTACCACCAATCAAAATATTCCCGAACCGATGAGAAACAAACAACAGGACGAAACAGCGGTCCAAGTTACTCCTCATGGTGTATATAAGTGCGCACAGTGCGGTTACGCGACGACCAATTTAAACAGAATTAAGAAGCACGTGAGAAAAGATCACAAAACGATCAGCGATCCTACCGATAGCGTGCTCGCCGAGCTTAGCAGAACTTTGAAAGACGTTGCCAACAAACATAAGGTACCAGCTTGCTACGCGACGCCACAGGATATGAATCCCAATCCTGACAAGACGATCATGCAACCATTTTTAATCGAAGAACAGGACACGATGCAAGCTGGAGAGGAATCCAGCTCGGAGAAACGGTTCGCGCCGGCTTTGGTCTATCTGCCGGTTAAATCGCGAATCAACAACGCGCTCACTGCATCCTTCACCCTCAGTCCTGCTTGA
Protein Sequence: MSSTMAHETTTISELTELDSXRIELRRTRREETSSFRRGFNRAEEETKTNDAREILLDVNARCARRIERGRGRRRGQRSQFFDSKVTLNVHLDNEHGSANQISEQSQRRSPNSVIKQEPSQQQDQSENPVNLLSVKNFAINWLATGQHVQSQAQMQTQNEESWPGPASQIPPLPNHLQILSGFPGALAQYLPMPAFPLTDSGSIARSSLGPTPIRIFNPDAYCDVCNKELCNKYFLKTHKANKHGIYVDSPGPSTVDNSIPGLLFPTNYSSNMDKLELSATPPTPIVACDLCQKRFKNEESMRKHKQKMHVELLDQSQESQINLSQNEEDRDTSRDSLGGIETLFKQEYGIEQEDATFVPAPRHLSPQSIQQARESGFSADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIIVQDNERSPSIPGTAATWHQVQTSPLNLIVTENPGSTESNDRVVDDYECKLCGIRFQTIDLYQAHCRKMHESEEQQSPRQECELDISDQRNDSISEDLQKLQTMLLQLNGLKPTKGLSCNVCGKECETRATLHIHMITEHGAIQEDSTSSPQEKSPLTTTSAFCALCGKDYASQDALRKHIADEHQPAVSNTTPQTPTTTATTTNSNSTSQTPTERKVTLMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAHIGGVICNICNKELCSKYFLRVHKHNTHGVVDENTPSSVKQETNEASNADDAALKPEQLGDLSHRYFTHFTEVCPICNRRFRSIKWLKAHLMGDHGKTGIDKWREMEQQYQTTPKSGNRTANVISKNPQQSSNLKIPNGFEISQQIKSADYTGLGNQVLSNLLGSSSEDQQLKSYRCSYCNFTTTVLPFLFLHERSHVNSRDNEGEKSLQCPICSQGFHQPEMLHQHLLTSHQFPTLLPHFQPSVLNNLGVDAEKLNEAKEKLDLEAKEDHTRKSPQVTTNQNIPEPMRNKQQDETAVQVTPHGVYKCAQCGYATTNLNRIKKHVRKDHKTISDPTDSVLAELSRTLKDVANKHKVPACYATPQDMNPNPDKTIMQPFLIEEQDTMQAGEESSSEKRFAPALVYLPVKSRINNALTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_00226817;
80% Identity: -