Basic Information

Insect: Melipona beecheii
Gene Symbol: -
Assembly: GCA_032399605.1
Location: JAUCMO010000506.1:5617471-5620875[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00022 0.018 15.6 1.5 1 23 101 124 101 124 0.94

2 13 0.01 0.84 10.3 4.6 2 23 248 270 248 270 0.91

3 13 0.0011 0.094 13.3 2.1 3 23 315 336 314 336 0.96

4 13 5.8 4.7e+02 1.7 7.6 3 23 426 447 425 447 0.95

5 13 0.087 7.1 7.4 1.9 1 23 498 521 498 521 0.94

6 13 8.9e-05 0.0073 16.8 0.3 2 23 570 592 569 592 0.95

7 13 0.00052 0.043 14.4 0.0 3 23 616 637 615 637 0.91

8 13 0.0075 0.62 10.8 3.6 2 23 678 700 677 700 0.96

9 13 0.1 8.4 7.2 4.2 3 23 715 736 713 736 0.92

10 13 0.00026 0.021 15.4 0.1 2 23 781 803 781 803 0.94

11 13 0.36 30 5.5 3.1 1 23 883 905 883 905 0.98

12 13 0.0014 0.11 13.1 0.7 2 23 919 941 918 941 0.93

13 13 0.0067 0.55 10.9 0.8 1 23 1016 1039 1016 1039 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00022	0.018	15.6	1.5	1	23	101	124	101	124	0.94
2	13	0.01	0.84	10.3	4.6	2	23	248	270	248	270	0.91
3	13	0.0011	0.094	13.3	2.1	3	23	315	336	314	336	0.96
4	13	5.8	4.7e+02	1.7	7.6	3	23	426	447	425	447	0.95
5	13	0.087	7.1	7.4	1.9	1	23	498	521	498	521	0.94
6	13	8.9e-05	0.0073	16.8	0.3	2	23	570	592	569	592	0.95
7	13	0.00052	0.043	14.4	0.0	3	23	616	637	615	637	0.91
8	13	0.0075	0.62	10.8	3.6	2	23	678	700	677	700	0.96
9	13	0.1	8.4	7.2	4.2	3	23	715	736	713	736	0.92
10	13	0.00026	0.021	15.4	0.1	2	23	781	803	781	803	0.94
11	13	0.36	30	5.5	3.1	1	23	883	905	883	905	0.98
12	13	0.0014	0.11	13.1	0.7	2	23	919	941	918	941	0.93
13	13	0.0067	0.55	10.9	0.8	1	23	1016	1039	1016	1039	0.98

Sequence Information

Coding Sequence: ATGTCCTCAACGATGGCGCACGAGACGACGATATCGGAGTTGACGGAATTGGACAGCGACGGATCGAGTTGCGGTGAACGGGACGCGAGGAAACGTCTTCGTTTCGACGTGGATTCGACCGGGCCGAAGAAGAGGCGAAAACAAACGACGCCGGTGAGATTCTCGTCGACGTTGGTGCCCGGCGCGCACGAGGAATcgaacgaggacgaggacgaggacgaggacagCGAAGGTAAGCTGTCGTTGCAATCACCCGTGCCGTGTCAATCGTCGATAAGGGACGAGAATCTGAATAACGAATTCCGTTGCAAATACTGTAGTCAGTTTTTCGACAACAAAGAAACGCTGAACGTTCACCTCGACAATGAGCACGGCTCCGCGAGTCAGAGTCGAAATAGGTCTCCGAATGCCGCGGTCAAACAAGAATCGTCTCAGCAGCTGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTGAAGGATTTCGCGATAAATTGGCTAGCCAGCGGGCAACACGTGCAATCGCACAACGCACAAATGCAGACGCAGAACGAGGAATCCTGGATGCCCGGATCGGTCAGTCATATCCCACCGTTGCCCAACCACTTGCAAATCCTTTCTGGCTTTCCCGGCGCGTTGGCGCAATATTTGCCGATGCCCGCGTTCCCGTTAACAGATTCCGGCTCGATGGTGAAACCGTCGTTGGGACCAACGCCGGTCAGGATCTTCAATCCGGAAGCGTACTGTGATCTGTGCAATAAAGAATTCTGCAACAAGTATTTCCTCAAGACGCACAAAGCGAACAAGCACGGCATCTACGCCGATTCGCCGGGACCTAGCACCGTGGACAATAGCATTCCAGGGCCGTTGTTCCCTGCCAACTGTTCTAGCAACGTGATTAAGCTGGAACTACCTCCTACGCCACCTACGCCGACCGTCGCGTGCGATCTCTGTCAGAAGCGTTTCAAGAACGAGGAATCGATGCGTAAACACAAGCAAAAGATGCACACCGAGCTGCTGGATCAGTCGCAGGAGTCGCAGTCCGTCAATCTGTCGCAAAACGAGGAGGACAGGGACGTCTCCACCCCGAGGGAGTGCAGTCTCGGTGGTATGGAGACGTTGTTTAAACAAGAGTACGGGACACTGGAGCAGGAGGACGCGACGTTCGTACCAGCGCCCAGGCATCTATCGCCTCAATCGATTCAGCAGGCACGGGACTCGGGTTTCAGCGCCGATCGGCTTCGTCGTTTGGGTGTCATAAACCCGGAGGCGTTCTGCGAGATATGCTGCAAAGAGTATTGCAACAAGTACTTCCTGCGTACGCACAAAATGAAGAGGCACGGCATCGTCGTTCACGACAACGAGAGATCGCCCGGCAGTCAAGGAACGGCGCCCAGCTGGCATCAAGTGCAGACCAGCCCGTTGAATCTGATCGTGACGGAGTCGAATTCTGGTAGCACGgagtcgaacgaacgagcagCCGGCGACGACTACGAGTGCAAATCGTGCGGGATACGTTTCCAGACGATTGGCCTGTATCAGGCACACTGTCGGAAGATGCACGAGAGCGAGGAGCAGCAGTCGCCCAGGCCAGACCCAGGCGAGTTGGACGCGGCCGATcaacgaaacgattcgatcTCGGAGGATCTTCAGAAATTGCAGACGATGCTGTTGCAGTTGAACGGGCTCAAGTCTAGCAAGGGGTTATCGTGCAACGTGTGCGGAAAAGAATTCGAGACCAGAGCTGCGTTGCATATTCATACGATAACGGAGCACGGAGCCAGCCAAGAAGATTCGACGTCCTCGCCGCAAGAAAAATCACCGTTAACCACGACCGTCGCGTACTGCGCCCTGTGCGGCAAGGATTACGCGAGCCAAGACGCTCTCAGGAAGCACATCGCCGACGAACATCAACCACCGATTTCGAGTGCCACTCTTGCTCACACTCCCACGGCGACAACGGCCAACACGAGTTCGACGAGCCAGACTCCGACGGAGAGGAAGGTCACGTCGATGACGCCCACGTCCAGCTACTGCGAGATATGCAACAAGGAGTTGTGCAATAAGTACTTCATGAAGACGCACATGCAAAGAATGCACGGCATCGAGATCGAGAACGGAGCGCAGATCGGAGGCGTGATATGCAACATTTGCAACAAGGAGCTGTGCAGCAAGTACTTTCTCCGCGTTCACAAGCACAACACCCACGGCATAGTCAATGAAAACACTGCCAGTTCGGTGAAACAAGAGGCTCACGAGACAACGAGCGCGGACGATGTCGCTTTGAAGCCGGAACAGCTCGGTGATCTGAGCCACAGATACTTCACTCACTTCACAGAGGTTTGTCCGATCTGCAGCAGGAGGTTCCGTAGTATAAAGTGGCTAAAGGCACACTTGATGGGCGATCACGGGAAAACCGGTGTCGATAAATGGCGTGAAATGGAGCAACAGTATCAAACGTTGCCAAAATCAGGGAACAGAGCAGTGAACGTGACGTCGAAGAGTGCTCAACAGAGCTCGAACCTGAAGATACCGAATGGATTTGAAATGTCGCAACAACTCAAGTCCACCGACTACGCTGGCTTGGGTAATCAAGTTCTGTCGAATTTACTAGGGTCGTCGACCGAAGATCAACAGCTGAAAAGCTATCATTGCTCCTATTGCAATTTCACGACTACCGTGCTGCCGTTCCTCTTTCTTCACGAAAGGTCTCACGTGATCACGCACGACAACACGGAAGGAGAAAAATCGCTGCAGTGCCCGATTTGCTCGCAAGCTTTTCATCAGCCGGAGATGCTGCATCAGCATCTACTCGCGTCGCACCAGTTCCCCACTTTGCTGCCTCATTTTCAACCCCCtgtgtttaataatttaataagcCTGGACGCGGAGAAGTTGAACGAAGCCAAAGAGAAACTCGAGATGGAAGCAAGGGAAGATCGCACCGAGAACAGTTCACAAACGATTGCCAGTCAACATATTCCCGATCCGACGAGACACAAACGACAGGACGAAACGGCGGTGCAAGTCACGCCTCACGGTGTGTACAAATGCGCGCAGTGCGGCTACGCGACGACCAATTTGAACAGGATCAAAAAGCACGTGAGAAAAGATCACAGAACGATCAGCGATCCTACGGACAGCGTGCTCGCCGAGCTCAGCAGAACTCTGAAAGACGTTGCCAATAAGCACAAGGTGCCAGCTTGCTACGCGACGCCGCAGGACATGAATTCGAATCCTGACAAGACGATCATGCAGCCGTTTCTCATCGAGGAACAGGACACGATGCAAGCTGGAGAGGAGTCCAGCTCGGAGAGGCGATTCGCGCCGGCTTTGGTCTACTTGCCGGTTAAGTCGAGAATCAACAACGCGTTCACCGCGTCCTTCACCCTCAGTCCCGCTTGA
Protein Sequence: MSSTMAHETTISELTELDSDGSSCGERDARKRLRFDVDSTGPKKRRKQTTPVRFSSTLVPGAHEESNEDEDEDEDSEGKLSLQSPVPCQSSIRDENLNNEFRCKYCSQFFDNKETLNVHLDNEHGSASQSRNRSPNAAVKQESSQQLDQSENPVNLLSVKDFAINWLASGQHVQSHNAQMQTQNEESWMPGSVSHIPPLPNHLQILSGFPGALAQYLPMPAFPLTDSGSMVKPSLGPTPVRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYADSPGPSTVDNSIPGPLFPANCSSNVIKLELPPTPPTPTVACDLCQKRFKNEESMRKHKQKMHTELLDQSQESQSVNLSQNEEDRDVSTPRECSLGGMETLFKQEYGTLEQEDATFVPAPRHLSPQSIQQARDSGFSADRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVVHDNERSPGSQGTAPSWHQVQTSPLNLIVTESNSGSTESNERAAGDDYECKSCGIRFQTIGLYQAHCRKMHESEEQQSPRPDPGELDAADQRNDSISEDLQKLQTMLLQLNGLKSSKGLSCNVCGKEFETRAALHIHTITEHGASQEDSTSSPQEKSPLTTTVAYCALCGKDYASQDALRKHIADEHQPPISSATLAHTPTATTANTSSTSQTPTERKVTSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVNENTASSVKQEAHETTSADDVALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKTGVDKWREMEQQYQTLPKSGNRAVNVTSKSAQQSSNLKIPNGFEMSQQLKSTDYAGLGNQVLSNLLGSSTEDQQLKSYHCSYCNFTTTVLPFLFLHERSHVITHDNTEGEKSLQCPICSQAFHQPEMLHQHLLASHQFPTLLPHFQPPVFNNLISLDAEKLNEAKEKLEMEAREDRTENSSQTIASQHIPDPTRHKRQDETAVQVTPHGVYKCAQCGYATTNLNRIKKHVRKDHRTISDPTDSVLAELSRTLKDVANKHKVPACYATPQDMNSNPDKTIMQPFLIEEQDTMQAGEESSSERRFAPALVYLPVKSRINNAFTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_01417927;
80% Identity: -