Basic Information

Insect: Bombus difficillimus
Gene Symbol: -
Assembly: GCA_014737525.1
Location: JACXIT010000241.1:2405883-2409263[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00026 0.024 15.2 1.5 1 23 102 125 102 125 0.94

2 13 0.0092 0.86 10.4 4.6 2 23 251 273 251 273 0.91

3 13 0.001 0.096 13.3 2.1 3 23 318 339 317 339 0.96

4 13 5.1 4.8e+02 1.7 7.6 3 23 422 443 421 443 0.95

5 13 0.024 2.2 9.1 1.6 1 23 492 515 492 515 0.94

6 13 0.0013 0.12 13.0 1.1 2 23 563 585 562 585 0.95

7 13 0.00066 0.062 13.9 0.1 3 23 609 630 608 630 0.91

8 13 0.0067 0.63 10.8 3.6 2 23 672 694 671 694 0.96

9 13 0.091 8.5 7.2 4.2 3 23 709 730 707 730 0.92

10 13 0.00023 0.022 15.4 0.1 2 23 775 797 775 797 0.94

11 13 0.042 4 8.3 1.6 1 23 877 899 877 899 0.98

12 13 0.00062 0.058 14.0 1.3 2 23 912 934 911 934 0.96

13 13 0.0059 0.56 10.9 0.8 1 23 1008 1031 1008 1031 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00026	0.024	15.2	1.5	1	23	102	125	102	125	0.94
2	13	0.0092	0.86	10.4	4.6	2	23	251	273	251	273	0.91
3	13	0.001	0.096	13.3	2.1	3	23	318	339	317	339	0.96
4	13	5.1	4.8e+02	1.7	7.6	3	23	422	443	421	443	0.95
5	13	0.024	2.2	9.1	1.6	1	23	492	515	492	515	0.94
6	13	0.0013	0.12	13.0	1.1	2	23	563	585	562	585	0.95
7	13	0.00066	0.062	13.9	0.1	3	23	609	630	608	630	0.91
8	13	0.0067	0.63	10.8	3.6	2	23	672	694	671	694	0.96
9	13	0.091	8.5	7.2	4.2	3	23	709	730	707	730	0.92
10	13	0.00023	0.022	15.4	0.1	2	23	775	797	775	797	0.94
11	13	0.042	4	8.3	1.6	1	23	877	899	877	899	0.98
12	13	0.00062	0.058	14.0	1.3	2	23	912	934	911	934	0.96
13	13	0.0059	0.56	10.9	0.8	1	23	1008	1031	1008	1031	0.98

Sequence Information

Coding Sequence: ATGTCCTCGACGATGGCGCATGAGACGACGACGATATCGGAATTGACGGAATTGGACAGCGACGGATCGAGTTGCGGAGAACGCGACGCGAGGAAACGTCTTCGGTTCGACGCGGATTCAACAGGGCCGAAGAAGAGACGAAAACAAACAACGCCCGTGAGATTCTCCTCGACGTTAATGCCCGGTGTGCACGAAGAATCGAACGAGGACGAGGAAGAGGACGAAGACAGCGAAGGTAAGCTGTCGTCGCAATCACCCATACCGAGTCAATCATCGATAAGAGACGAGAATCTGAATAACGAATTCCGTTGCAAATATTGTAGTCAGTTTTTCGATAGCAAGGAAACGTTGAACGTACACCTCGACAATGAGCACGGTTCCGCGAATCAGATATCGGAACAAAGTCAAAGTAGATCTCCGAATTCCGTGATCAAACAAGAACCGTCTCAGCAACTGGACCAATCCGAGAATCCCGTTAATTTGCTTAGCGTAAAGAACTTCGCGATAAACTGGCTAGCCACCGGGCAACACGTGCAATCGCAGGCACAAATGCAGACGCAGAACGAAGAATCCTGGCCCGGGCCAGCGAGTCAAATTCCACCGTTACCCAATCACTTGCAAATCCTTTCTGGCTTTCCTGGCGCCTTGGCGCAGTATTTACCTATGCCCGCGTTCCCATTGACGGACTCCGGTTCTATCGCCAGGCCCTCGTTGGGACCAACGCCGGTCAGGATCTTTAATCCGGACGCGTACTGTGATCTGTGCAATAAAGAGTTCTGCAACAAGTATTTCCTCAAGACACACAAAGCGAACAAGCACGGTATCTACGTCGATTCACCGGGACCTAGCACCGTCGACAATAGCATTCCAGGACCATTGTTCCCTACCAACTATCCTAGTAACATGGTTAAGCTAGAACTGCCCGCGACACCACCTACACCGACCGTCGCGTGTGATCTCTGCCAGAAACGTTTCAAAAACGAGGAATCGATGCGTAAACACAAACAAAAGATGCATGCTGAATTATTGGATCAGTCGCAAGAGATCAATTTGTCGCAAAACGAAGAGGATAGGGATACGTCGAGGGATAGTCTCGGCGGTATGGAAACGCTGTTTAAGCAAGAATACGGGATAGAACAAGAGGATGCAACGTTCGTACCAGCACCCAGACACCTATCGCCTCAATCGATTCAACAGGCACGAGAGTCTGGTTTCAACGCCGATCGACTTCGTCGTTTAGGGGTTATAAATCCAGACGCGTTTTGCGAGATATGTTGTAAAGAGTACTGTAATAAGTACTTCCTACGGACTCATAAAATGAAGAGGCACGGCATCATCGTTCAAGACAACGAAAGATCGCCTAGCAATCCAGGGACAGCGGCCAGTTGGCATCAAGTGCAGACCAGTCCGTTAAATCTGATCGTGACGGAGAATCCTGGTAGCACAGAATCGAACGATCGAGTCGTCGACGATTACGAGTGCAAGTTATGTGGTATACGTTTCCAGACGATTGGCCTGTATCAAGCTCACTGTCGGAAGATGCACGAGAGCGAGGAACAACAATCGCCTAAGCAAGAGTGCGAGCTAGATATATCCGATCAACGGAACGATTCGATCTCGGAGGATCTTCAAAAATTGCAGACGATGCTGTTGCAACTGAACGGACTCAAGCCTACCAAGGGATTATCGTGCAACGTGTGCGGAAAAGAATGCGAGACCAGAGCAGCGTTGCATATTCATACGATAACGGAACACGGCGCCATCCAAGAAGATTCAACATCCTCGCCGCAAGAAAAGTCACCCTTAGCTACAACCTCAGCGTTCTGCGCCCTATGCGGAAAAGATTACGCGAGTCAGGACGCTCTCAGGAAACATATCGCCGACGAACATCAACCAGCGGTTTCGAACACCATTCCTCACACTCCTACGACCACAGCGACGACGACCAATTCGAATTCGACCAGCCAAACTCCAACCGAGAGAAAGGTAACGTCGATGACGCCAACGTCGAGCTATTGCGAGATATGCAACAAGGAATTATGCAATAAGTACTTCATGAAGACGCATATGCAAAGAATGCACGGTATCGAGATTGAAAATGGAGCCCAGATCGGTGGCGTGATATGCAACATTTGCAACAAGGAGCTGTGCAGCAAATACTTTTTACGCGTTCACAAGCACAACACTCATGGCATAGTCGACGAAAATACTCCCAGTTCGGTAAAACAAGAGACCCACGAGGCATCAAACGCGGACGATGCTGCTTTGAAGCCGGAGCAACTCGGTGATCTGAGTCACAGATATTTCACCCACTTTACAGAGGTTTGTCCAATCTGTAGCAGGAGGTTCCGTAGTATAAAGTGGTTAAAGGCTCACCTGATGGGTGATCATGGGAAAACAGGCATCGATAAATGGCGCGAGATGGAGCAACAATACCAAACAACGCCGAAATCAGGGAATAGAACGGCGAATGTAATATCGAAGAACCCTCAACAGAGCTTGAATTTGAAGATACCGAATGGATTTGAAATCTCACAGCAAATCAAGTCTGCCGATTACACTGGTTTGGGTAATCAAGTTCTGTCAAATTTACTGGGGTCATCTTCCGAAGATCAACAGTTGAAAAGCTATCGCTGTTCCTATTGCAATTTCACGACCACCGTGTTACCGTTTCTCTTCCTTCACGAGAGGTCTCACGTGAATTCCCGTGACAACGAAGGAGAGAAATCGCTTCAATGTCCGATTTGCTCCCAAGGTTTCCATCAGCCGGAAATGTTGCATCAGCATCTCCTCACGTCGCACCAATTTCCCACGTTGCTGCCTCATTTTCAACCCCCTGTGCTTAATAATTTAGGTCTGGATGCGGAGAAATTGAACGAGGCCAAAGAGAAACTCGATCTGGAAGCGAAGGAGGACCATACGAGAAACAGTCCACAAGCTACCACCAATCAAAATATTCCCGAACCGATGAGAAACAAACAACAGGACGAAACAGCGGTCCAAGTTACTCCTCATGGTGTATATAAGTGCGCACAGTGCGGTTACGCGACGACCAATTTAAATAGAATTAAAAAGCACGTGAGAAAAGATCACAAAACGATCAGCGATCCTACCGATAGCGTGCTCGCCGAGCTTAGCAGAACTTTGAAAGACGTTGCCAACAAACATAAGGTACCAGCTTGCTACGCAACGCCACAGGATATGAATTCCAATCCTGATAAAACGATCATGCAGCCATTTTTAATCGAAGAACAGGACACGCTGCAAGCTGGAGAGGAATCCAGCTCGGAGAAACGGTTCGCGCCGGCTTTGGTCTATCTGCCGGTTAAATCGCGAATCAACAACGCGCTCACTGCATCCTTTACCCTCAGTCCTGCTTGA
Protein Sequence: MSSTMAHETTTISELTELDSDGSSCGERDARKRLRFDADSTGPKKRRKQTTPVRFSSTLMPGVHEESNEDEEEDEDSEGKLSSQSPIPSQSSIRDENLNNEFRCKYCSQFFDSKETLNVHLDNEHGSANQISEQSQSRSPNSVIKQEPSQQLDQSENPVNLLSVKNFAINWLATGQHVQSQAQMQTQNEESWPGPASQIPPLPNHLQILSGFPGALAQYLPMPAFPLTDSGSIARPSLGPTPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDSPGPSTVDNSIPGPLFPTNYPSNMVKLELPATPPTPTVACDLCQKRFKNEESMRKHKQKMHAELLDQSQEINLSQNEEDRDTSRDSLGGMETLFKQEYGIEQEDATFVPAPRHLSPQSIQQARESGFNADRLRRLGVINPDAFCEICCKEYCNKYFLRTHKMKRHGIIVQDNERSPSNPGTAASWHQVQTSPLNLIVTENPGSTESNDRVVDDYECKLCGIRFQTIGLYQAHCRKMHESEEQQSPKQECELDISDQRNDSISEDLQKLQTMLLQLNGLKPTKGLSCNVCGKECETRAALHIHTITEHGAIQEDSTSSPQEKSPLATTSAFCALCGKDYASQDALRKHIADEHQPAVSNTIPHTPTTTATTTNSNSTSQTPTERKVTSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTPSSVKQETHEASNADDAALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKTGIDKWREMEQQYQTTPKSGNRTANVISKNPQQSLNLKIPNGFEISQQIKSADYTGLGNQVLSNLLGSSSEDQQLKSYRCSYCNFTTTVLPFLFLHERSHVNSRDNEGEKSLQCPICSQGFHQPEMLHQHLLTSHQFPTLLPHFQPPVLNNLGLDAEKLNEAKEKLDLEAKEDHTRNSPQATTNQNIPEPMRNKQQDETAVQVTPHGVYKCAQCGYATTNLNRIKKHVRKDHKTISDPTDSVLAELSRTLKDVANKHKVPACYATPQDMNSNPDKTIMQPFLIEEQDTLQAGEESSSEKRFAPALVYLPVKSRINNALTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00224784;
90% Identity: iTF_00226817;
80% Identity: -