Tmad015295.1
Basic Information
- Insect
- Tribolium madens
- Gene Symbol
- retn
- Assembly
- GCA_015345945.1
- Location
- JADDYM010000091.1:13930143-13938936[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-20 3.8e-17 62.4 0.0 14 89 2 75 1 75 0.94
Sequence Information
- Coding Sequence
- ATGCACGTCGAGGGTACTCCGATTAATCGACTGCCCATCATGGCCAAATCCGTTCTCGATTTATACGAATTGTACAATTTAGTTATCGCAAGAGGTGGACTTGTTGATGTCATCAATAAGAAGCTCTGGCAGGAAATTATAAAAGGGCTGCATCTACCGTCGTCGATAACGTCGGCAGCTTTCACACTCCGGACACAATACATGAAATACTTATACCCTTACGAATGTGAAAAACGTCGCCTCAGCACTCCCGCCGAACTTCAAGCTGCCATCGACGGTAACCGCCGCGAAGGCCGCCGCAGCAGCTACGGCCAGTACGACTCCATGCAGCGTTCCCCCAACCCCTCGCAGATGTCGCCATTGTCCCTTGTATCCCAACAGCAGCAACTTGCCGCCCGTATGAACTCTGTCATGAGCGGCGGCATGGGCCTCCACAACGGCGCCCACCACCCTAGCCACCCCCAACCTCTAGGCCAGCCACTCAACGGCGGCCCCCTTCCTGGTCTCGCCCCCAGCGAGTTCGAGGCGCGCATGATGGAGTATGTAAAACTTCTCAACAAGGAGATCCGGAGCTCGGCTGCGACTCCGCCGCGACAAGGAGATGTTTCTCCCCCCAACACCACTTCACCCCTCAACCAGCTGGAGTTGTCGCGGATAACACTCTGGAATATGTACAATAATAATCAGCCCCCCGTCGAGCCCCAAAAGGAGGCGCTGAATCTCTCGGATCCGACGCAACCCTCGGTGAAGAGGGAGCCGGAGCACAGGGACTCGCCGCCGCCTCCGAAGAAGTTTTCCAAAGATGAAGACGAACAGAAGATCTCGCCCGCCACGCATATCAAAATTAACAGTAGGGGGGATGCGCGTAACGGAGACAGTTCCTTAGTAGTCAGTATGGAATTAAATGGAATTACGTATCAAGGCGTTTTATTCGCGCAGTCTTCGCCATCTAGCGGCCGAACGGCGATGGCTTCGTAA
- Protein Sequence
- MHVEGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDSMQRSPNPSQMSPLSLVSQQQQLAARMNSVMSGGMGLHNGAHHPSHPQPLGQPLNGGPLPGLAPSEFEARMMEYVKLLNKEIRSSAATPPRQGDVSPPNTTSPLNQLELSRITLWNMYNNNQPPVEPQKEALNLSDPTQPSVKREPEHRDSPPPPKKFSKDEDEQKISPATHIKINSRGDARNGDSSLVVSMELNGITYQGVLFAQSSPSSGRTAMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003554; iTF_00433827; iTF_00369358; iTF_01409737; iTF_00929355; iTF_00465772; iTF_00740594; iTF_01257757; iTF_00903888; iTF_00852465; iTF_01566034; iTF_00646580; iTF_00629591; iTF_00902021; iTF_00021995; iTF_00620368; iTF_00631925; iTF_00631294; iTF_00167481; iTF_00415673; iTF_00031578; iTF_00977107; iTF_00752731; iTF_00870345; iTF_00414842; iTF_01344699; iTF_00392541; iTF_00395037; iTF_00841629; iTF_01366125; iTF_01289533;
- 90% Identity
- iTF_00167481;
- 80% Identity
- -