Lhir013802.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- retn
- Assembly
- GCA_947359425.1
- Location
- OX375800.1:19670089-19671682[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-20 4.5e-17 62.9 0.0 7 89 21 101 16 101 0.92 2 2 0.61 2.6e+03 -0.4 0.0 25 49 246 270 200 294 0.71
Sequence Information
- Coding Sequence
- ATGGCAAATCCAAATGTTTTTCATGCTTTTTCAGACACACCAAGCAATGTGATTTATACAAAATCTGTACCAGACATGGCAAAATCTAAATGCACACCAATCAATCGACTACCAATAATGGCAAAATCTGTACTAGATCTATACGAATTGTACAATCTGGTGATAGCAAGAGGAGGACTTGTTGACGTTATCAACAAGAAACTATGGCAGGAAATCATTAAAGGCCTACATCTACCATCTTCGATAACATCAGCTGCTTTCACCCTACGAACACAATATATGAAGTATTTATATCCCTACGAATGCGAGAAGCGACGTCTTAGTACTCCAGAAGAACTACAAGCAGCTATAGATGGTAATCGAAGAGAAGGACGTCGTAGCAGCTATGGACAATACGATTCAATTCAACGTTCACCAAATCCAAATCAAATATCACCCTTATCTCTAGTATCACAACAACAGCAGCAATTAGCAGCTCGTATGAGTTCCGTAATGAGTGGAGGAATGGCTTTGGCACCAAATGGAGTTCACCATCCCAGCCATCCACAACCATTAGGACAACAACTAAACGGAATACCAATACCAAATCTAGCACCAAGCGAATTCGAAGCACGAATGATGGAATACGTAAAGCTTCTTAATAAAGAAATTCGAAATGCTGGTGCAGCTACACCACCTCCTAACAATAGACAAGCTGGTGATCTATCACCACCAAATACTACATCTCCTCTCAATCAATTAGAGATGTCTAGGATTAATCTATGGAATATATACAATAATAATAATCATCACCAATCGACGCCAGTGGTAGAACCACAGAAGGAAGCACTGAATTTAGCTGACGCAATGCCAATGGTTGCTCCAAAAAGAGAACCCGAGCAAAGAGACTCGCCACCACCACCAAAGAAAATTCCAAAAGAAGAAGAGAAATATAAACCACCAACGATACCGTCAACACATATCAAGATTAATAGTCAAGGCGATTCCAGAGCCGGTGATGGTTCTCTCGAGGTATCCATGGAATTAAATGGTGTGACTTACCAAGGTGTGTTGTTTGCAAAAGGAGCAACATCTAGCGGCCGAACCGCTCTAATGTCGTGA
- Protein Sequence
- MANPNVFHAFSDTPSNVIYTKSVPDMAKSKCTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPEELQAAIDGNRREGRRSSYGQYDSIQRSPNPNQISPLSLVSQQQQQLAARMSSVMSGGMALAPNGVHHPSHPQPLGQQLNGIPIPNLAPSEFEARMMEYVKLLNKEIRNAGAATPPPNNRQAGDLSPPNTTSPLNQLEMSRINLWNIYNNNNHHQSTPVVEPQKEALNLADAMPMVAPKREPEQRDSPPPPKKIPKEEEKYKPPTIPSTHIKINSQGDSRAGDGSLEVSMELNGVTYQGVLFAKGATSSGRTALMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480641;
- 90% Identity
- -
- 80% Identity
- -