Lory003477.2
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- retn
- Assembly
- GCA_030157265.1
- Location
- CM058049.1:13134079-13136542[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-21 1.5e-17 63.6 0.0 12 89 37 112 22 112 0.89
Sequence Information
- Coding Sequence
- ATGAAGATTGACGTATCTAAGATTGAAAACATTTGTCTTGAGAACGCATCAAGTATAATTACCAGatttaaaagacttttaaatcatttgcatatcctctttaatttttttcttttttcatcaGGAACACCAATCAACAGACTACCAATTATGGCTAAATCGGTTTTGGATCTCTATGAATTGTACAACTTGGTAATTGCAAGAGGAGGACTAGTCGAtgttatcaataaaaaactatGGCAAGAAATCATTAAAGGACTGCATTTACCCTCTTCTATAACGTCAGCAGCGTTCACTTTAAGGACTCAatatatgAAATATTTGTACCCCTACGAGCACGAGAAGTTGAAGCTGAGTACACCTGCAGACCTCCAGGCCGCCATCGACGGCAATCGCCGCGAAGGCCGTCGCAGTAGTTACGGTCAATATGATACAGTCCAACGTTCCCCGAATCCATCtcaaatgtcacccctatctttaGTCTCCCAACAGCAACAGTTAGCCGCCCGCATGAATTCCGTAATGAGCGGTAGCATGGGTTTACATAACGGAGCCCATCATCCAAGTCATCCACAACCTTTAGGTCAACCATTAAATGGCGGCCCATTGCCGGGTTTAGCTCCAAGTGAATTTGAAGCACGAATGATGGAATATGttaaacttttaaacaaagaaataagAAGTTCAGCAGCAACTCCTCCAAGACAAGGTGATATATCGCCTCCAAATGCTACATCACCACTTAATCAATTAGAATTATCACGAATGACACTTTGGAAtatgtataataataatcaaactTCAGTTGAGCCACAAAAGGAAGCTCTTAATTTATCTGAACCAGCACAACCTTCGATTAAAAGAGAACCAGAACATAGGGATTCCCCGCCTCCTCCGAAGAAGATGTCCAAAGATGATGAGGATACTAAAATTATGGCACCTGCTacacatattaaaattaacagtagaggGGATGCCCGTAACGGAGACAGTTCCTTAGTAGTAAGTATGGAATTGAATGGAATCACATATCAAGGAGTATTATTTGCGCAAACGTCGCCATCTAGTGGCCGAACGGCTTTAGCTTCATAA
- Protein Sequence
- MKIDVSKIENICLENASSIITRFKRLLNHLHILFNFFLFSSGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEHEKLKLSTPADLQAAIDGNRREGRRSSYGQYDTVQRSPNPSQMSPLSLVSQQQQLAARMNSVMSGSMGLHNGAHHPSHPQPLGQPLNGGPLPGLAPSEFEARMMEYVKLLNKEIRSSAATPPRQGDISPPNATSPLNQLELSRMTLWNMYNNNQTSVEPQKEALNLSEPAQPSIKREPEHRDSPPPPKKMSKDDEDTKIMAPATHIKINSRGDARNGDSSLVVSMELNGITYQGVLFAQTSPSSGRTALAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480641;
- 90% Identity
- iTF_00167481;
- 80% Identity
- -