Rmor017628.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- retn
- Assembly
- GCA_963680705.1
- Location
- OY796657.1:98719399-98733956[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-20 2.3e-16 61.8 0.0 16 89 17 88 13 88 0.95 2 2 3 2.5e+04 -2.4 0.0 26 38 225 237 187 252 0.70
Sequence Information
- Coding Sequence
- ATGGGTGTACCCCGTTCTCGCTGCAGCTTACTTTCAGGAGAAGTCTGTAACGGAACACCAATAAATAGGCTACCAATAATGGCAAAGTCGGTACTTGATCTCTATGAACTTTATAATCTGGTTATAGCAAGGGGAGGGCTCGTAGacgttataaataaaaaattatggcaGGAAATAATTAAAGGACTCCATTTACCGTCATCCATCACATCTGCTGCATTTACACTCAGAACCCAatatatgaaatatttgtacCCCTACGAATGCGAAAAACGCCGGCTAAGTACACCCGCCGAACTACAGGCAGCTATCGACGGAAACCGAAGAGAAGGCCGCAGGAGCAGTTACGGCCAGTACGATTCCATTCAGCGATCTCCAAACCCTAGTCTCCAAATGTCACCCCTCTCGTTAGTTTCACAGCAGCATCAACAGCAGCTAGCGGCACGCATGATGGGCAGCAGTATAAACCTCCATAATGGCGCCCACCATCCTAGTCATCCGCAACCCATGGGCCAACCCGTAAACGGGGGGCCGTTACCTGGTCTGGCACCAAGTGAATTCGAGGCCCGTATGATGGAGTACGTGAAGTTgttaaataaggaaataaggagtAATGCGGCCACGCCACCTAGCGATATTTCGCCTCCAAACACCACCTCGCCATTGAATCAGTTGGAAATGTCCCGGATGACACTGTGGAATTTGTACAACAACAATCAGCCGCCAATAGAACCACAGAAGGAGCCTATAAATTTGTCGGAACCATCGGCGACAGTTAAAAGGGAGCCGGAGTGTAGAGAGTCATCACCGCCACCAAAGAGGGTGACCAAAGATGATGAGGAGTCAGAACTGCCAAAAACACATTCACCTTCCACACACATTAAAATAAACAGTAGAGGCGATTCGCGCAACGGTGACAATTCCCTGGTAGTTAGTATGGAACTCAATGGTGTCACATATCAGGGTGTACTTTTTGCACAGAGTTCATCCCACAGTGGTCGGACGGCGTTGGCGTCTTAA
- Protein Sequence
- MGVPRSRCSLLSGEVCNGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDSIQRSPNPSLQMSPLSLVSQQHQQQLAARMMGSSINLHNGAHHPSHPQPMGQPVNGGPLPGLAPSEFEARMMEYVKLLNKEIRSNAATPPSDISPPNTTSPLNQLEMSRMTLWNLYNNNQPPIEPQKEPINLSEPSATVKREPECRESSPPPKRVTKDDEESELPKTHSPSTHIKINSRGDSRNGDNSLVVSMELNGVTYQGVLFAQSSSHSGRTALAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01480641;
- 90% Identity
- iTF_00110322; iTF_00392541; iTF_01310111;
- 80% Identity
- -