Tele027154.1
Basic Information
- Insect
- Theocolax elegans
- Gene Symbol
- lrrfip2
- Assembly
- GCA_026168455.1
- Location
- CM047429.1:72621887-72624370[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-114 2.6e-109 367.2 36.9 1 300 29 326 29 326 0.96 2 2 0.027 2e+03 -0.2 5.5 122 172 326 376 325 396 0.76
Sequence Information
- Coding Sequence
- ATGGAGACATCTGTAGCAGGACGCAGGCGAACAGCCACTAGGCATTCAGCAGAAGATCAAGCATTAGATCAGATTGCCAAAGAGGCAGAGGCTAGATTAGCCGCAAGAAGACAAGCTAGAGCTGAAGCACGAGAAATCCGAATGAGGGAATTGGAGAGGCAACAAAAAGAAGCTGAAGAGAATGCGGATAGAGTTTTTGACATGTGCACAGCAGATGCAAATAGAACTATGAGGGTGACCCCAGACCCTATAAGGGCTTCTCGTCTTCTTGCAAATACAAATAATTTTCAGTCAAGTCGAAGATCATCAGAAGACTCTTTGGAAGATGCTGGTCTTGGGAGAGATCTTCGAATAGAATTGAAAGAACTTGAAGAGAAATTTAGGAAAGCAATGATAGCTAATGCTCAATTAGATAATGAAAAGTCTTCCTATGCGTATCAAGTTGATTTATTGAAGGATAAGTTAGAAGAGCTTGAGGAAATGACTGCACAATTACGACGTGAGCTTAGAGAAAAAAATCGCGAGGCGGATCAATCGAAACGTCTTAGTCAACGATTAAAAGAAGATTTAGATATGTGTAGAGCACAACTCTCAGAAAGAGATACACTTATTCAAGAGAACGGATTAGTCATAGTAGAAGATGAAGGAAGCGACAATGAAGAAACAGAAAAAGAGAATGGACCTATCTACAGAAAGAGAGTGCTAGTCAGTACAGAAGCTGCAGAACTGTTACAAAATGCTGGAGAAGGTTCATTAGATGTACGACTGAGAAAATTTGCGTCAGAAAAGAAAGAGTTGCAGGATGAAATTAGGCATCTAAGGTTAGAACTTGAAGAAGCAAGAAATCGAATGAGGCCAGAAAGATCTTCAGGTTCCATACTAGGCTTATCTGATTCGGAAGATGCTCAGAGAGAAGCTAATAAATTATTAGCGGATTATAAATTTAAGTTACAAAAAGCAGAACAAGACATGTCGACTCTCCAGGCAACTGTAGCCAGGTTAGAAAGTCAGGTAATTCGTTATAAATCAGCTGCAGAAGCATCCGAGAAGGCTGAAGACGAATTAAAAGTTGAAAAAAGAAAACTACAAAGAGAGGTACGGGAATCGCAGGGTCGTGTAGAAGAGTTGGAAACGTCCAATAATCATTTACAACGTCGTCTAGACAAACTGAAAAATGCTAAATCGGCTCTTTTAAAAGAACTTTGA
- Protein Sequence
- METSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVFDMCTADANRTMRVTPDPIRASRLLANTNNFQSSRRSSEDSLEDAGLGRDLRIELKELEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEEMTAQLRRELREKNREADQSKRLSQRLKEDLDMCRAQLSERDTLIQENGLVIVEDEGSDNEETEKENGPIYRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLELEEARNRMRPERSSGSILGLSDSEDAQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETSNNHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00739085; iTF_00692911; iTF_00690178; iTF_00309507; iTF_01190339; iTF_01216772; iTF_00305639; iTF_01274473; iTF_01036202; iTF_00714379; iTF_00969614; iTF_01037008; iTF_00691089; iTF_01381330; iTF_00707859; iTF_01487027; iTF_00712852; iTF_00845269; iTF_00968821; iTF_00668438; iTF_00368119; iTF_00463991; iTF_00079929; iTF_00305050; iTF_01035419; iTF_00304476; iTF_01380605; iTF_00287230; iTF_00143871; iTF_00286335; iTF_00691936; iTF_00645954; iTF_00734570; iTF_00326382; iTF_00708532; iTF_00713659; iTF_01379996; iTF_01524029; iTF_00877853; iTF_01465189; iTF_01466214; iTF_01467977; iTF_01469683; iTF_01467094; iTF_01468858; iTF_00073726; iTF_00368799;
- 80% Identity
- -