Csis015004.1
Basic Information
- Insect
- Chalcis sispes
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_949987625.1
- Location
- OX465095.1:56343675-56346874[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-113 1e-108 364.5 34.5 1 300 29 326 29 326 0.96 2 2 0.0092 4.1e+02 1.3 2.8 202 237 365 399 327 401 0.56
Sequence Information
- Coding Sequence
- ATGGAGATATCGGTGGCAGGACGAAGGCGAACTGCCACCAGGCATTCAGCAGAAGATCAAGCTTTAGATCAAATTGCTAAAGAGgcaGAGGCAAGATTAGCTGCAAGAAGACAAGCTAGAGCAGAAGCACGTGAAATTCGAATGAGGGAATTAGAAAGACAACAAAAAGAAGCTGAAGAGAATGCAGATAGAGTTTTTGATATGTGTACAgcaGATGCAAACAGAGCCATGAGGGTTACACCTGATCCTATACGTGCTTCACGACTTCTGGCAAATACCAATAATTTTCAATCCAGTCGAAGATCTTCTGAAGATTCTTTAGAAGATGCTGGTCTTGGCAGAGATCTTCGATTGGAACTTAAAGAATTTGAAGAGAAATTTCGAAAAGCAATGATAGCTAATGCACAACTAGATAATGAAAAGTCTTCCTATGCATATCAAGTTGATTTATTAAAGGATAAATTAGAGGAGCTTGAAGAAATGACTGCCCAATTACGTCGTGAACTTAGGGAAAAAAATCGCGAGGCTGATCAATCTAAACGCCTTAGTCAGAGATTAAAAGAAGATTTAGATATTTGTAGGGCCCAGCTCTTAGAAAGAGATACTTTAATACAAGAAAATGGATTAGTCATTGTAGAAGACGAAGGTAGTGAAGGTGAAGaaacacaaaaagaaaatggtCCTATCTGTAGAAAGCGAGTGCTAGTCAGTACAGAAGCTGCAGAACTTCTACAAAATGCTGGTGAAGGCTCTTTAGaTGTTCGGTTGAGAAAGTTTGCATCGGATAAAAAAGAACTGCAAGATGAAATAAGGCATTTAAGGTTAGAATTAGAAGAAGCAAGAAATCGAATGAGGCCAGAAAAATCTTCAGGTTCTAttttaggaTTGTCGGATTCAGAAGATGCTCAAAGAGAAGCTAATAAACTTTTAGCTgattataagtttaaattacaaaaagcaGAACAAGATATGTCAACTCTTCAAGCAACTGTAGCTAGGTTAGAAAGTCAAGTGATTCGCTACAAATCAGCAGCTGAAGCTTCTGAAAAAGCAGAAGATGagttaaaagttgaaaaaagaaaactattaaGAGAgGTCAGAGAATCACAAGGTCGAGTTGAAGAATTGGAAACAGCTAATTCGCACTTGCAGCGTCGTTTAGATAAACTGAAAAATGCTAAATCAGCCTTGTTAAAAGAACTTTGA
- Protein Sequence
- MEISVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVFDMCTADANRAMRVTPDPIRASRLLANTNNFQSSRRSSEDSLEDAGLGRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEEMTAQLRRELREKNREADQSKRLSQRLKEDLDICRAQLLERDTLIQENGLVIVEDEGSEGEETQKENGPICRKRVLVSTEAAELLQNAGEGSLDVRLRKFASDKKELQDEIRHLRLELEEARNRMRPEKSSGSILGLSDSEDAQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLLREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01428278;
- 80% Identity
- -