Nvit006451.1
Basic Information
- Insect
- Nasonia vitripennis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_009193385.2
- Location
- NC:6456856-6462678[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.3e-112 1e-107 359.4 36.0 1 300 29 326 29 326 0.97 2 3 0.0036 45 2.7 2.8 121 171 325 375 323 378 0.91 3 3 0.042 5.3e+02 -0.8 5.7 193 238 356 400 338 401 0.60
Sequence Information
- Coding Sequence
- ATGGAGACATCCGTGGCTGGACGACGAAGAACCACCACCAGGCATTCTGCCGAGGACCAGGCACTCGACCAGATTGCCAAAGAGGCAGAGGCAAGATTAGCTGCAAAAAGACAAGCTAGAGCTGAGGCACGAGAAATACGAATGAGGGAGTTAGAAAGACAGCAAAAAGAAGCAGAGGAGAATGCAGATAGAGTATTTGATATGTGTACAGCAGACGCAAACAGAGCCATGAGGGTAACACCAGACCCTGTTCGTGCTTCTCGGCTTCTTGCAGGCACAAACAATTTTCAGTCAAGTCGAAGATCTTCTGAAGATTCTTTGGAAGATGCAGGTCTTGGCAGAGATCTTCGAatAGAACTGAAAGAGTTTGAGGAGAAATTCCGTAAAGCAATGATAGCTAATGCTCAATTAGACAATGAAAAGTCTTCCTACAGTTATCAAGTTGATTTATTGAAGGATAAGCTTGAAGAGCTTGAAGAAATGACTGCCCAATTACGCCGCGAACTCAGGGAAAAGAATCGTGAAGCAGAGCAATCTAAGCGCCTTAGTCAGAGATTAAAAGAAGATTTAGACATTTGTAGGGCACAGCTTTTAGAAAGAGATACTCTAATACAGGAAAATGGCCTGGTAATAGTTGAAGATGAAGGCAGTGAAGGTGAAGAAACACAAAAAGAGAATGGACCTGTTGTTAGAAAGAGAGTACTAGTCAGTACAGAAGCTGCAGAATTATTACAAAATGCTGGAGAAGGTTCTCTAGATGTGCGACTGCGGAAGTTTGCATCTGAGAAGAAAGAGCAACAAGATGAAATTAGGCATCTCAGGCTAGAATTGGAAGAAGCAAGAAATAGAATGAGGCCTGAGAGATCCTCAGGTTCTGTGCTAGGCTTATCAGATTCAGAAGATGCTCAGAGAGAAGCTAATAAACTCTTGGCAGATTACAAGTTTAAGTTACAAAAAGCAGAACAAGACATGTCTACACTTCAAGCAACTGTAGCTAGATTGGAGAGTCAAGTAATTCGTTATAAGTCTGCAGCCGAAGCTTCAGAAAAAGCAGAAGATGAACTAAAAGTTGAAAAGCGGAAATTACAAAGAGAGGTTCGGGAATCACAGGGAAGAGTGGAAGAACTGGAGACGGCTAATTCTCATCTACAGCGACGTTTGGACAAACTGAAAAATGCTAAATCTGCCCTCTTGAAGGAACTGTGA
- Protein Sequence
- METSVAGRRRTTTRHSAEDQALDQIAKEAEARLAAKRQARAEAREIRMRELERQQKEAEENADRVFDMCTADANRAMRVTPDPVRASRLLAGTNNFQSSRRSSEDSLEDAGLGRDLRIELKEFEEKFRKAMIANAQLDNEKSSYSYQVDLLKDKLEELEEMTAQLRRELREKNREAEQSKRLSQRLKEDLDICRAQLLERDTLIQENGLVIVEDEGSEGEETQKENGPVVRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKEQQDEIRHLRLELEEARNRMRPERSSGSVLGLSDSEDAQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01428278;
- 80% Identity
- iTF_01035419;