Ccun011768.1
Basic Information
- Insect
- Chouioia cunea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030064505.1
- Location
- JAOPFQ010000005.1:8362736-8364780[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.5e-110 1.2e-105 352.9 35.1 1 300 29 323 29 323 0.94 2 3 0.005 84 2.2 2.2 122 171 323 372 322 376 0.91 3 3 0.035 5.8e+02 -0.6 5.0 196 238 356 397 341 398 0.58
Sequence Information
- Coding Sequence
- ATGGAGACGTCAGTGGCAGGACGGAGGCGTACTGCCACTAGGCATTCAGCTGAAGATCAAGCTCTAGATCAAATTGCCAAAGAGGCGGAAGCAAGGTTAGCTGCCAGAAGATTAGCCAGAGCAGAAGCAAGAGAAATACGAATGAGGGAGTTAGAAAGGCAGCAAAAAGAAGCAGAGGAAAATGCTGATAGAGTATTTGACATGTGTACAGcTGATGCTAACAGATCCATGAGGGTCACACCAGATCCTATTAGAGCTTCTAGACTTCTTGCAAATAGTAACAACTTTCAATCAAGTCGAAGATCTTCTGAGGATTCCTTAGAAGATGCTGGTCTGGGAAGGGATCTTAGAatggagcttaaagaatttgaagagaagTTTAGAAAAGCAATGATAGCAAATGCTCAATTGGACAATGAAAAGTCTTCCTATGCCTATCaagttgatttattaaaagataaattagAAGAGCTTGAAGAACAAACAGCCCAATTACGCCGTGAActcagagaaaaaaatcgcgaaGCTGACCAAGCAAAACGTCTTGGTCAAAGACTTGAGGAAGATTTGAATGTCTGTAAAGCAATGCTAATGGAAAGAGACACTCTAATACAAGAGAATGGATTGGTTATAGTGGAGGATGAGGGCAGTGAAAATGAAGAGACACTCAAGGAGAATGGCCCTATTTGCCGAAAGAAAGTGCTAGTCAGTACAGAAGCTGCAGAATTATTGCAAAATGCTGGAGAAGGTTCtctagacGTTAGACTGAGAAAGTTTGCATCTGATAAGAAAGAGCAGCAAGACGAAATTAGGCATCTCAGGCTAGAACTGGAAGAAGCGAGAAACAGAATGAGGCCAGAGCGATCTTCAGGTTCCGGACTGGattCTGATGACGCCCAGAGGGAagctaataaattattagctgattacaaattcaaattgcAAAAGGCAGAGCAAGATATGTCCACTCTGCAAGCAACGGTAGCCAGACTGGAAAGTCAAGTAATTCGCTACAAGTCAGCAGCTGAGGCTTCTGAAAAAGCAGAAGATgagttgaaaattgaaaagagaaagttACAAAGAGAGGTCAGAGAATCGCAAGGTCGTGTTGAGGAATTAGAAACTGCTAATTCACACCTACAGCGACGTTTAGATAAGCTGAAAAATGCGAAATCAGCTTTACTCAAAGAACTTTGA
- Protein Sequence
- METSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRLARAEAREIRMRELERQQKEAEENADRVFDMCTADANRSMRVTPDPIRASRLLANSNNFQSSRRSSEDSLEDAGLGRDLRMELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEEQTAQLRRELREKNREADQAKRLGQRLEEDLNVCKAMLMERDTLIQENGLVIVEDEGSENEETLKENGPICRKKVLVSTEAAELLQNAGEGSLDVRLRKFASDKKEQQDEIRHLRLELEEARNRMRPERSSGSGLDSDDAQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKIEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01428278;
- 80% Identity
- -