Cflr004612.1
Basic Information
- Insect
- Copidosoma floridanum
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_000648655.2
- Location
- NW:48627-53052[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4e-111 4.6e-107 357.1 32.9 1 300 29 323 29 323 0.94 2 3 0.0049 56 2.2 2.9 122 171 323 372 321 375 0.91 3 3 0.036 4.1e+02 -0.6 4.8 195 237 355 396 341 398 0.54
Sequence Information
- Coding Sequence
- ATGGAGACATCAGTAGCAGGAAGGCGACGCACTGCTACTAGGCATTCAGCTGAAGATCAAGCACTTGATCAGATTGCTAAAGAGGCAGAGGCAAGACTGGCTGCACGAAGGCAAGCTAGAGCAGAAGCTAGAGAAATACGAATGAGGGAATTGGAACGGCAGCAGAAAGAAGCTGAAGAGAATGCAGATAGAGTTTTTGATATGTGTACAgCAGATGCAAACAGAGCAATGAGGGTTACACCAGACCCTTTACGTGCCTCTAGACTACTTGCAAATGCCAACAATTTTCAGTCAAGTAGAAGATCTTCTGAGGATTCTTTAGAAGATGCAGGTCTTGGCAGGGACCTGaggtTGGAACTCAAGGaatgtgaagaaaaatttaGGAAAGCAATGATAGCAAATGCTCAATTAGATAATGAAAAGTCTTCCTATGCATACCAAGTAGACTTGTTAAAAGATAAACTAGAAGAATTAGAGGAAGTTATTGCCCAGCTACGTCGCGAACTCAGGGAAAAGAATCGCGAAGCAGATCAAGCAAAGCGTCTTAGTCAGAGACTGAAAGAGGATTTAGATATTTGTAGGGCGCAACTTTTAGAAAGGGACACGCTTATACAAGAAAATGGATTGGTCATAGTGGAAGATGAGGGTAGTGAAAATGAAGAAACGCCGAAGTTGAACGGACCTGTTTGCAAAAAAAGAGTGCTAGTCAGTACAGAAGCTGCAGAGTTATTACAGAACGCTGGTGAAGGTTCTTTAGATGTTCGGCTGAGAAAGTttgcatcagaaaaaaaagaactacaGGATGAAATTGGGCATCTTAGGCTAGAACTGGAAGAGGCAAGGAATCGTATGAGGCCAGAGCGATCTTTGGGTTCTATGCTTGATTCAGAAGACGCTCAGAGAGAAGCTAATAAGTTGTTGGCGGATTACAAGTTCAAATTACAAAAGACAGAGCAAGATATGTCGACTCTTCAAGCGACTGTTGCTAGATTGGAAAGTCAAGTAATACGTTACAAATCTGCAGCCGAGGCTTCTGAAAAGGCTGAAGATGAattgaaagttgaaaaaagaaaattacaaagaGAGgtTCGGGAATCGCAGGGTCGTGTTGAAGAATTAGAAACAGCGAATTCACATCTGCAACGACGTTTGGACAAactgaaaaatgcaaaatcagcACTTTTTAAAGAACTTTGA
- Protein Sequence
- METSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVFDMCTADANRAMRVTPDPLRASRLLANANNFQSSRRSSEDSLEDAGLGRDLRLELKECEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEEVIAQLRRELREKNREADQAKRLSQRLKEDLDICRAQLLERDTLIQENGLVIVEDEGSENEETPKLNGPVCKKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIGHLRLELEEARNRMRPERSLGSMLDSEDAQREANKLLADYKFKLQKTEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALFKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01428278;
- 80% Identity
- -