Abak012329.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000013.1:414566-416459[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-112 2.2e-108 361.9 35.3 1 300 29 326 29 326 0.97 2 3 0.0041 63 2.5 2.7 122 171 326 375 324 379 0.91 3 3 0.045 6.9e+02 -0.9 5.6 194 238 357 400 344 401 0.59
Sequence Information
- Coding Sequence
- ATGGAGACATCTGTGGCTGGAAGGCGGAGAACTGCCACAAGGCATTCTGCGGAGGACCAAGCACTTGATCAGATTGCCAAAGAGGCTGAGGCAAGATTGGCCGCAAGAAGACAAGCTAGAGCTGAGGCACGAGAAATTCGAATGAGGGAGTTAGAAAGACAACAGAAAGAAGCTGAGGAGAATGCAGATAGAGTTTTTGATATGTGTACAGCAGATGCAAATAGGACTATGAGGGTAACACCTGATCCTATGCGTGCCTCACGGCTTCTTGCAAACACAAACAATTTTCAGTCAAGTCGAAGGTCTTCTGAAGATTCATTGGAAGATGCTGGTTTAGGCAGAGATCTTAGAATAGAACTGAAAGAATTTGAAGAGAAATTCCGTAAAGCAATGATAGCTAATGCCCAATTAGATAATGAAAAGTCTTCCTATGGTTATCAAGTTGATTTACTGAAGGACAAACTCGAAGAACTTGAAGAAGTAACTGCTCAATTACGCCGTGAACTCAGGGAAAAAAATCGCGAAGCAGATCAATCCAAGCGTCTTAGTCAGAGATTGAAAGAAGATTTAGATGTTTGCCGGGCACAACTTTTAGAAAGAGACACTTTAATACAGGAAAACGGACTGGTAATTGTTGAAGACGAAGGTAGCGATGGTGAGGAAACACAAAAAGAGAATGGACCTTTAGTCAAAAAGAGAGTACTAGTCAGTACAGAAGCTGCAGAATTATTACAAAACGCTGGTGAAGGCTCTTTAGATGTTCGACTGAGAAAGTTTGCATCTGAAAAGAAAGAGCAACAGGATGAAATCAGGCATCTCAGGCTAGAACTGGAAGAAGCAAGAAATAGAATGAGGCCAGAGAGATCCTCAGGCTCTATTCTAGGATTATCAGATTCAGAAGATGCTCAAAGAGAAGCTAATAAACTTTTAGCGGATTATAAATTTAAGTTACAAAAAGCAGAGCAAGACATGTCAACACTTCAAGCAACCGTGGCCAGGTTGGAGAGTCAAGTGATTCGTTATAAATCAGCTGCTGAAGCTTCGGAAAAAGCTGAAGATGAGTTAAAAGTGGAAAAGAGAAAGTTACAAAGAGAGGTACGGGAATCCCAGGGAAGAGTGGAAGAACTAGAAACGGCTAATTCGCATTTACAACGGCGTTTGGACAAATTGAAAAATGCTAAATCAGCTCTCTTGAAGGAACTGTGA
- Protein Sequence
- METSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVFDMCTADANRTMRVTPDPMRASRLLANTNNFQSSRRSSEDSLEDAGLGRDLRIELKEFEEKFRKAMIANAQLDNEKSSYGYQVDLLKDKLEELEEVTAQLRRELREKNREADQSKRLSQRLKEDLDVCRAQLLERDTLIQENGLVIVEDEGSDGEETQKENGPLVKKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKEQQDEIRHLRLELEEARNRMRPERSSGSILGLSDSEDAQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01428278;
- 80% Identity
- -