Gnig007085.1
Basic Information
- Insect
- Galeopsomyia nigrocyanea
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_035047105.1
- Location
- JAWWMK010000040.1:4592936-4594945[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-108 4.3e-104 349.2 35.9 1 300 29 323 29 323 0.93 2 3 0.0048 2e+02 2.3 2.6 122 171 323 372 321 376 0.91 3 3 0.046 1.9e+03 -1.0 5.5 195 238 355 397 336 398 0.60
Sequence Information
- Coding Sequence
- ATGGAGACGTCAGTGGCAGGACGGAGGCGTACTGCCACTAGGCATTCAGCTGAAGATCAAGCTCTAGATCAGATTGCCAAAGAGGCGGAAGCAAGGTTAGCTGCCAGAAGATTAGCCAGAGCTGAAGCAAGAGAAATACGAATGAGGGAGTTAGAGAGGCAGCAAAAAGAAGCAGAGGAAAATGCGGATAGAGTGTTCGACATGTGCACAGCTGATGCTAACAGAGCCATGAGGGTCACACCGGATCCTATTCGAGCTTCTAGGCTCCTTGCAAACAGCAACAACTTTCAATCAAGTCGAAGATCTTCTGAGGATTCCTTGGAAGATGCTGGGCTTGGAAGGGATCTCAGAatGGAGCTCAAAGAGTTTGAAGAGAAGTTCAGGAAAGCAATGATAGCAAATGCTCAATTGGACAATGAAAAGTCTTCCTATGCCTATCAAGTTGATCTATTAAAAGATAAGTTAGAGGAGCTCGAAGAACAAACGGCCCAATTGAGACGCGAGCTCAGGGAGAAAAATCGCGAGGCTGATCAAGCTAAACGACTTGGTCAGAGGCTCGAGGAAGATTTGAATGTCTGTAAAGCAATGCTCACAGAAAGGGACACTTTAATACAAGAGAATGGATTGGTTATAGTGGAAGACGAGGGCAGTGAAAATGAAGAGACGCATAAGGAAAACGGGCCCGTTTGCCGAAAGAAAGTGCTAGTCAGTACAGAAGCCGCagaattattgcaaaatgCTGGAGAAGGTTCTCTAGATGTTAGACTGAGAAAGTTTGCAGCTGACAAGAAGGAGCAGCAAGATGAGATCAGGCATCTCAGGCTAGAACTGGAAGAAGCAAGAAACCGAATGAGGCCAGCGCGATCTTCAGATTCTGGACTAGATTCCGAAGAAGCGCATAGGGAAGCTAATAAATTGTTAGCCgattacaaattcaaattgcAAAAGGCAGAGCAGGACATGTCTACACTTCAAGCGACAGTAGCCAGACTCGAGAGCCAAGTAATTCGCTACAAATCCGCAGCTGAAGCTTCTGAAAAGGCCGAAGACGAGTTGAAGattgaaaagagaaagttACAAAGAGagGTCAGAGAATCACAAGGTCGCGTCGAGGAGTTAGAAACCGCCAATTCACACTTGCAGCGACGCTTAGATAAGCTGAAAAACGCGAAATCAGCGCTACTCAAAGAACTTTGA
- Protein Sequence
- METSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRLARAEAREIRMRELERQQKEAEENADRVFDMCTADANRAMRVTPDPIRASRLLANSNNFQSSRRSSEDSLEDAGLGRDLRMELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEEQTAQLRRELREKNREADQAKRLGQRLEEDLNVCKAMLTERDTLIQENGLVIVEDEGSENEETHKENGPVCRKKVLVSTEAAELLQNAGEGSLDVRLRKFAADKKEQQDEIRHLRLELEEARNRMRPARSSDSGLDSEEAHREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKIEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01428278;
- 80% Identity
- -