Msti000502.1
Basic Information
- Insect
- Megastigmus stigmatizans
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_900490015.1
- Location
- UELV01175840.1:69207-71372[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-113 9.3e-109 364.2 36.4 1 300 29 326 29 326 0.96 2 3 0.0033 1.1e+02 2.8 2.8 121 171 325 375 323 379 0.91 3 3 0.044 1.5e+03 -0.9 5.7 193 238 356 400 338 401 0.60
Sequence Information
- Coding Sequence
- ATGGAGACATCGGTGGCAGGAAGGAGGCGGACTGCCACTAGGCATTCGGCAGAAGACCAAGCTCTAGATCAAATTGCTAAAGAGGCAGAAGCAAGATTAGCAGCAAGAAGACAAGCTAGAGCAGAAGCACGAGAAATACGAATGAGGGAGTTAGAAAGGCAACAGAAAGAAGCTGAGGAGAATGCAGATAGAGTTTTTGATATGTGCACAGctgATGCAAACAGAGCTATGAGGGTAACACCAGATCCTATCCGGGCTTCGCGGCTTCTTGCgaattctaataattttcaatcaagTCGAAGGTCTTCTGAAGATTCTCTGGAAGAAGCAGGACTTGGCCGAGATCTTCGAaTAGAATTGAAGGAATTTGAAGAGAAATTTAGAAAAGCTATGATAGCAAATGCTCAACTTGACAATGAAAAGTCTTCCTATTCATATCAAGTCGATTTATTGAAAGACAAGCTAGAGGAACTTGAAGAAATGACTGCTCAACTGCGACGCGAACTCAGGGAAAAGAATCGTGAAGCAGATCAGTCTAAACGTCTTAGCCAGCGATTAAAAGAAGACTTAGATATTTGTAGGGCGCAACTTTTAGAGAGAGACACTTTAATACAGGAAAATGGATTAGTGATAGTTGAAGATGAAGGCAGTGAGAATGAAGACACACAAAAAGAAAATGGCCCTGTTTATCGAAAAAGAGTGCTAGTCAGTACAGAAGCTGCAGAATTATTACAGAATGCTGGTGAAGGTTCTCTAGaCGTCCGACTGAGAAAGTTTGCATCAGAAAAGAAAGAGCTACAAGATGAAATAAGGCATCTCAGGCTAGAATTGGAAGAAGCAAGAAATCGAATGAGGCCAGAGCGATCCTCAGGTTCTATATTAGGTTTGTCAGATTCAGAAGATGCTCAAAGGGAAGCTAATAAACTCTTAGCTGACTATAAGTTCAAATTGCAAAAAGCAGAACAAGATATGTCTACTCTTCAAGCAACAGTGGCTAGGCTAGAAAGTCAAGTGATTCGTTATAAATCAGCAGCTGAGGCTTCTGAGAAAGCAGAAGATGAGTTAAAAGTTGAAAAACGAAAATTACAAAGAGAGGTCAGAGAATCGCAAGGTCGAGTCGAGGAGCTAGAAACAGCAAATTCGCATTTACAGCGACGTCTGGATAAACTGAAAAATGCTAAATCAGCTCTTTTAAAGGAACTTTGA
- Protein Sequence
- METSVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVFDMCTADANRAMRVTPDPIRASRLLANSNNFQSSRRSSEDSLEEAGLGRDLRIELKEFEEKFRKAMIANAQLDNEKSSYSYQVDLLKDKLEELEEMTAQLRRELREKNREADQSKRLSQRLKEDLDICRAQLLERDTLIQENGLVIVEDEGSENEDTQKENGPVYRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLELEEARNRMRPERSSGSILGLSDSEDAQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01428278;
- 80% Identity
- -