Pgri018134.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia griseotomentosa
Gene Symbol
-
Assembly
GCA_963931875.1
Location
OZ007561.1:82282234-82298020[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.3e-06 0.0015 20.6 1.3 1 23 592 614 592 614 0.97
2 18 0.00018 0.03 16.5 0.5 1 23 620 642 620 642 0.97
3 18 8e-05 0.013 17.6 0.6 1 23 648 670 648 670 0.98
4 18 6e-06 0.00099 21.2 3.0 1 23 676 698 676 698 0.97
5 18 7.9e-05 0.013 17.7 4.7 1 23 704 726 704 726 0.99
6 18 0.00014 0.023 16.9 5.6 1 23 732 754 732 754 0.97
7 18 6.8e-07 0.00011 24.2 4.3 1 23 760 782 760 782 0.98
8 18 2.5e-07 4.2e-05 25.5 2.4 1 23 788 810 788 810 0.97
9 18 0.00015 0.025 16.8 6.7 1 23 816 838 816 838 0.97
10 18 0.00025 0.041 16.1 6.6 1 23 844 866 844 866 0.98
11 18 2.3e-05 0.0038 19.3 4.5 1 23 872 894 872 894 0.98
12 18 8.6e-05 0.014 17.5 8.3 1 23 900 922 900 922 0.98
13 18 4.3e-06 0.00071 21.7 7.7 1 23 928 950 928 950 0.98
14 18 1.5e-06 0.00025 23.1 7.7 1 23 956 978 956 978 0.98
15 18 0.00048 0.079 15.2 9.5 1 23 984 1007 984 1007 0.95
16 18 0.0004 0.066 15.4 0.5 1 23 1013 1035 1013 1035 0.97
17 18 0.00058 0.096 14.9 4.5 1 23 1045 1067 1045 1067 0.98
18 18 2.1e-05 0.0035 19.5 1.6 1 23 1073 1096 1073 1096 0.96

Sequence Information

Coding Sequence
atgaatactGATAATGCAATTGCAAATGCAACAACTCCTGGTGAGTCATCAACAGCAGCAACATTATCAAATTCAACTACAACAACTGTTTCAGCAGTAACAACATCAAACGGCTATGATTCTCAGCAACAAAATCGCCATTCTcctttacaacaacaacagcagcagcaacaacaaacgCAATTAAATGAGTCGCGAAATATTTTAACTGTTGTTCAACCGCCAAATCAGGCATCTCAACAATATATGTCGACGCCAAATATTATAAGTATTCAAAATGCCGGAGGTGGTGGCGCTGGTTCTGGTATTGGCCACTTATCGCCATCACCAATATCGTTGACTGCAACGACAGCACCTTCTTCTATTGTTGTTGACCACAAACATGTTGTAACGCATCAACCGACTATAACATCTACAAATTCCGCAACGACACAACCAACAACTGTGGGTGTTGCTTCTAGTTCAGTCGCTGTACCCATGAGCACTACGTTAGTGTCTGCACATGAATCACATTTGCTGCATCACCATCAGCATCATGTGCATCATCATGTAAATCAAGCTGCTGGCACCCCGTTACTTCTAAGCAGTTCTGGTCATTCAACTCCAACGTCTACAACAGGAACACTTTTAGCCAATAATCCGCAAAATTTGGGTAAATATTGGGTTGTGACAAATTTGTTTCAAGGAGGGCCTGGTCAAGCGGCCCAATATAACGAAGGAGGTGTAAGCCACAGTCAGACATCTTTAGCAGGAGTGCCTTCATCAACATTAGTGCGTGCTATATCCACAACTGCAGGCAGCCCAACAGTGGTAACAAAAACTGAAGCAGTTTCTAGCAGTGCGGGAACACTGCAAATACCACAAACACAAATGTTATCTCAGGCGGGAATAACACAACAGTTGCCAAATGGCACCATTATAACAACACAGgcacagcaacaacaacagcagcagcaaagACATGTGACGGAacatcagcaacaacaacagcagcaacagtTGCATGTTCATGCCTTAAACAATGCAGAAGATAATCAtcagcagcaacagcaacaacaacagcaaatgaACCAACAGCAACATGTTGCTGTGCTACAAACAAGTGATACcattaaagaagaaaaaccttttatttcaaatggcaaaataacaacaacaaatcaACAGATCATTATGCAGCATATATCAACTGCAGCAACTTCGGGCAGCCCGGCTAACTCGGGAGCTACTACTATTACTTTGGGTACtccaaaaacagaaattaaagaCGATGGTAGCGTAGTGATGAGTGGAAAACTGCAGCCTGGCATTGAAATGTATAAAGTAAATATTGAAGATATATCTCAACTGTTTACTTATCATGAGGTATTTGGTAAACTACACGGCGATGTAATGAATCATCCTTTGGCAGCAGCACATGCCGCATTACCAGCTGCCGCCAATAGTAATATAGCGTCAGTTGTTACTGCATCAACTACTAGTGCAAATGAGGTCAATAATTCATCAGGCGCCACTGTAGTAACCAATAGTGTCCCTATAACTGAATCCACCAGTACGAGTTCGGTGGGTACTGGTGTAGTTGCTACCACTAGTACAGCGTCCAACTTAACATCCATAGCAACAAACTCAAATACAGTAGCTACCGCTACTTCTACAGCAGCTGGTGTACCTCCTGCAGGCTTATTAATGCCAAAAATGGAGGGAGGCATTGCTAGTGTGGAACAAAATACTGTTACTTTGGCTCCCGATGGCACCGTGGTGTCGACTGGCGAACATGTTTGCGATATATGCGGTAAAATGTTTGCCTTCCGCTATCAGTTAATTGTACATCGCCGTTATCACACCGAACGGAAGCCATTCAATTGCCAAGTTTGCGGTCAAGGTTTTTTTACTTCTCAAGATCTAACTCGCCATGGAAAGATACATATTGGTGGTCCCATGTTCACGTGCTTAGtatgttttaatgtttttgccAACAATGCCTCTTTGGAGCGTCACATGAAACGCCATTCAACGGATAAACCCTTTGCTTGTACAATATGTCAGAAAACATTTGCTCGCAAAGAACATTTGGAAAATCATTTTCGTTCACACACTGGTGAGACACCATTTCGGTGTCAATATTGTGCTAAAACATTTACACGCAAAGAACACATGGTAAATCATGTGCGTAAACATACGGGCGAGACACCACATCGTTGCGAAATTTGTAAGAAATCATTTACGCGCAAAGAACACTATGTTAATCACTATATGTGGCACACTGGTCAAACTCCACATCAATGTGAAGTATGTGGTAAAAAGTATACACGCAAAGAACATTTAGCAAATCATATGCGTTCTCATACAAATGACACACCATTTCGTTGTGAAATTTGTGGCAAAAGTTTTAGTCGTAAAGAGCATTTTACTAATCATATATTATGGCACACAGgtgAAACTCCTCATCGTTGTGATTTCTGTTCGAAAACGTTTACCCGTAAGGAACATTTATTGAATCATGTACGTCAGCATACTGGCGAATCGCCGCATCGTTGTACATATTGTATGAAAACTTTTACGCGCAAAGAACATTTGGTAAATCACATACGACAACATACTGGTGAAACACCATTTAAGTGCACTTATTGCACCAAAGCCTTCACGCGTAAAGATCACATGGTTAATCATGTGCGTCAGCACACTGGTGAATCACCACACAAGTGTACATTCTGTACAAAAACGTTCACGCGCAAAGAACATTTAACGAATCATGTTCGTCAACATACTGGTGAATCACCGCATCGTTGCAGCTACTGCAAAAAGACCTTTACACGCAAGGAACACCTTACGAATCACATACGTTTGCATACTGGTGATTCGCCGCACAAGTGTGAATATTGCCAAAAAACGTTCACACGCAAAGAACATCTCAATAATCATATGCGCCAACATTCAAGTGATAATCCACATTGTTGTAATGTCTGCAATAAACCATTTACACGCAAagaacatttaataaatcacATGTCACGCTGTCACACTGGTGATCGGCCATTTGCATGTGAAACTTGTGGAAAATCATTTCCTCTAAAGGGTAATTTACTCTTCCACCAACGTAGTCATACCAAGGGTCAAGAAATGGAAAGACCATTTTCGTGTGAGAAATGTCcgaaaacatttatttgtaaAGgACATTTGGTTTCTCATATGCGTTCTCATTCTGGCGAGAAACCACATGCCTGTACTTTGTGTAGTAAGGCATTTGTGGAAAGAGGTAATCTAAAGCGTCACATGAAAATGAATCACCCAAATGCTCCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCTCAAATTAAACAAGAGATAAAACCAGTTATCAGTGAAATAGATCCTCTACAAATAACAGCTCCAACAATGCATACCATACAACAAATAACAGCGGGAGGAACGGCAAATACAGTGCAACTAACGACGGGCTTGACACCTTTAGTAACATCAACAATAACATCGCACACTGCACAGAAGCAGGCGACACAACCTCAAGCACAAGTACAGCAAAAtcagttgcaacaacagcaacagcaagTAGTAACATCACACCAACAACAGCAGCAGGTAACAGCTCATCAACAAGCTttacagcagcaacaacaacagcatcaACAAAATCAATTATTGCAGTTGTCATTACAACAGGCCGCTGCTGCTGCAGCAGCTCATCAGCAAattcaacaacaacagcagcagcagcagcaacaacaacaacaacaacagcagcagcagcatcaAGAGCAACAACGTCAACATCATcatcaacaacagcagcagcaacaacagaCTCAACAGCAAGCTCATCATCAGCAACAAACAGCTACAAATGTTACTGTCGTTGCAAGTTCCcatcaacaacagcagcagcagcaacaacaacagccatCTCAACAACAAACGCAAACTCAACAGCAACCACCACCAGTGCCAATCGCTTTAATTCAAACCGATCAGGAAGCTTTGGCCCGTGCCACCATGCAACAATTACAACATATGCCCCCTAATGTTGAACAACATCCCGTTGTTTACTAA
Protein Sequence
MNTDNAIANATTPGESSTAATLSNSTTTTVSAVTTSNGYDSQQQNRHSPLQQQQQQQQQTQLNESRNILTVVQPPNQASQQYMSTPNIISIQNAGGGGAGSGIGHLSPSPISLTATTAPSSIVVDHKHVVTHQPTITSTNSATTQPTTVGVASSSVAVPMSTTLVSAHESHLLHHHQHHVHHHVNQAAGTPLLLSSSGHSTPTSTTGTLLANNPQNLGKYWVVTNLFQGGPGQAAQYNEGGVSHSQTSLAGVPSSTLVRAISTTAGSPTVVTKTEAVSSSAGTLQIPQTQMLSQAGITQQLPNGTIITTQAQQQQQQQQRHVTEHQQQQQQQQLHVHALNNAEDNHQQQQQQQQQMNQQQHVAVLQTSDTIKEEKPFISNGKITTTNQQIIMQHISTAATSGSPANSGATTITLGTPKTEIKDDGSVVMSGKLQPGIEMYKVNIEDISQLFTYHEVFGKLHGDVMNHPLAAAHAALPAAANSNIASVVTASTTSANEVNNSSGATVVTNSVPITESTSTSSVGTGVVATTSTASNLTSIATNSNTVATATSTAAGVPPAGLLMPKMEGGIASVEQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVISEIDPLQITAPTMHTIQQITAGGTANTVQLTTGLTPLVTSTITSHTAQKQATQPQAQVQQNQLQQQQQQVVTSHQQQQQVTAHQQALQQQQQQHQQNQLLQLSLQQAAAAAAAHQQIQQQQQQQQQQQQQQQQQQHQEQQRQHHHQQQQQQQQTQQQAHHQQQTATNVTVVASSHQQQQQQQQQQPSQQQTQTQQQPPPVPIALIQTDQEALARATMQQLQHMPPNVEQHPVVY