Basic Information

Insect: Gymnocheta viridis
Gene Symbol: -
Assembly: GCA_956483585.1
Location: OY101440.1:26669784-26685703[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9.2e-06 0.00098 20.6 1.3 1 23 575 597 575 597 0.97

2 18 0.00018 0.019 16.6 0.5 1 23 603 625 603 625 0.97

3 18 7.9e-05 0.0084 17.7 0.6 1 23 631 653 631 653 0.98

4 18 5.9e-06 0.00063 21.2 3.0 1 23 659 681 659 681 0.97

5 18 7.9e-05 0.0084 17.7 4.7 1 23 687 709 687 709 0.99

6 18 0.00014 0.015 16.9 5.6 1 23 715 737 715 737 0.97

7 18 6.8e-07 7.2e-05 24.2 4.3 1 23 743 765 743 765 0.98

8 18 2.5e-07 2.7e-05 25.5 2.4 1 23 771 793 771 793 0.97

9 18 0.00015 0.016 16.8 6.7 1 23 799 821 799 821 0.97

10 18 0.00024 0.026 16.1 6.6 1 23 827 849 827 849 0.98

11 18 2.3e-05 0.0024 19.4 4.5 1 23 855 877 855 877 0.98

12 18 8.5e-05 0.0091 17.6 8.3 1 23 883 905 883 905 0.98

13 18 2.3e-05 0.0024 19.4 8.8 1 23 911 933 911 933 0.97

14 18 1.5e-06 0.00016 23.1 7.7 1 23 939 961 939 961 0.98

15 18 0.00047 0.05 15.2 9.5 1 23 967 990 967 990 0.95

16 18 0.0004 0.042 15.5 0.5 1 23 996 1018 996 1018 0.97

17 18 0.00058 0.061 15.0 4.5 1 23 1028 1050 1028 1050 0.98

18 18 2.1e-05 0.0022 19.5 1.6 1 23 1056 1079 1056 1079 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9.2e-06	0.00098	20.6	1.3	1	23	575	597	575	597	0.97
2	18	0.00018	0.019	16.6	0.5	1	23	603	625	603	625	0.97
3	18	7.9e-05	0.0084	17.7	0.6	1	23	631	653	631	653	0.98
4	18	5.9e-06	0.00063	21.2	3.0	1	23	659	681	659	681	0.97
5	18	7.9e-05	0.0084	17.7	4.7	1	23	687	709	687	709	0.99
6	18	0.00014	0.015	16.9	5.6	1	23	715	737	715	737	0.97
7	18	6.8e-07	7.2e-05	24.2	4.3	1	23	743	765	743	765	0.98
8	18	2.5e-07	2.7e-05	25.5	2.4	1	23	771	793	771	793	0.97
9	18	0.00015	0.016	16.8	6.7	1	23	799	821	799	821	0.97
10	18	0.00024	0.026	16.1	6.6	1	23	827	849	827	849	0.98
11	18	2.3e-05	0.0024	19.4	4.5	1	23	855	877	855	877	0.98
12	18	8.5e-05	0.0091	17.6	8.3	1	23	883	905	883	905	0.98
13	18	2.3e-05	0.0024	19.4	8.8	1	23	911	933	911	933	0.97
14	18	1.5e-06	0.00016	23.1	7.7	1	23	939	961	939	961	0.98
15	18	0.00047	0.05	15.2	9.5	1	23	967	990	967	990	0.95
16	18	0.0004	0.042	15.5	0.5	1	23	996	1018	996	1018	0.97
17	18	0.00058	0.061	15.0	4.5	1	23	1028	1050	1028	1050	0.98
18	18	2.1e-05	0.0022	19.5	1.6	1	23	1056	1079	1056	1079	0.96

Sequence Information

Coding Sequence: atgaatactGAAAATGCAACAACTCCTGGTGAgtcaacaacagcagcaacattatcaaatacaactacaacaactGTTTCAGCAGTTACAACATCAAATGGCTACGATCCGCAGCAACAAAATCGTCATTCGCCTttacaacagcagcaacaacaaacgcAATTAAATGAGTCGCGTGATATTTTAACTGTTGTTCAACCACCAAATCAAATACCTCAACAATACATGTCGTCGCCAAATGTAAATAGGACTGGTGATGGCTCTGGTATTAATCATATACGATCACCTTTAACACTATCCCCAAAGGCGACAACAACGCCGACTACAATTGGTGTTGAACACAAAAATGTTATAACGCAACAACAAACTATAGCAACGACAAATTCCTCGTCGTCACTACAAACAACTGGGGATGTTGGTACTGTTCCAGTTGCTGTACCCATGAGCACCACTTTAGTGTCTGCACACGATCCGCATTTGCTTAATCATCACCACTATCAGCAACATATACACCATCATGTAAGCCCTGCCTCAGGTGCGCCTTTGCTGCTTACTAGCTCCGGTCCTTCAACTTCGACATCAACCACAGGAACACTTTTAGCCAATAATCCACCAAATTTGGGTAAATATTGGGTCGTGACAAATTTGTTTCAGGGAGCGCATGGTCAGGGGCCTCAATATAACGAGGGTGGTATAACCCACACCCAGACATCTATAGCAGGAGTGCCTTCATCGACATTAGTGCGTGCTATATCCACTACTGCGGGCAGCACAACAGTGGTAACAAAAACTGAAGCAGTTTCTAGCAGTGCGGGAACGCTGCAAATACCACATACGCAAATGCTATCGCAGGCTGGCATAACACAACAATTGCCAAATGGCACCATTATAACAACACAATCACAGCAACAGCAGCATAGACATCTGGCAGaacatcagcaacaacaacagcagcagcagcaacaacagttGCATGTACATGGCTTAAATAATAATCCAGAGGATAGTCgtcagcaacaacagcaattaGGTCAACAGCAACATGTTGCTGTTCTCCAGTCTGGTGTTGACATAAAAGATGAAAAACCTTTTGATTCAAATGGCAAAATATCTGCAACAAATCAACAGATTATTATGCAACATATATCGACAGGAGGAGCATCATCTGGCAACCCGTCTACCTCGGGAGCTACCACTATTACACTGGGTACTccaaaaacagaaattaaagaCGACGGTAGCGTAGTCATGAGCGGAAAACTACATCCAGGTATTGAAATGTATAAAGTTAATATCGAAGATATATCGCAACTATTTACCTATCACGAAGTTTTTGGTAAACTACACGGCGATGTTATGAATCATCCATTAGCAGCAGCCAGCCAGGCATCGTTAGCAGCAACCGCTAACAGTAATATGGCTACTGCTGTTTCAACGGCCACTAGCAGTGCAGCTGAAGTAAATAACACTACTGGAGTCCCAGTGGCTGCCAATAGCGTCGCCATAACAGAATCTACCAATACTAGTTCAGTTGGTGCAGGTGTTGTTGCTACAACCAGTACCATTGCTACAAATTCTAATTCTATAGCAACTGCTAGTTCTACAGCTACAGGTGTAGCTCCCGGTGGGTTGTTAATGCCGAAAATGGAGGGTGGTATCACAAGTGTGGAACAAAACACTGTTACTTTGGCACCAGATGGCACAGTAGTTTCAACTGGTGAGCATGTGTGCGATATATGcggaaaaatgtttgctttccGCTATCAATTAATAGTACATCGCCGTTACCACACCGAACGTAAACCTTTTAATTGTCAAGTCTGTGGTCAGGGGTTTTTTACTTCTCAGGATCTTACTCGGCATGGAAAGATTCATATTGGTGGACCCATGTTCACCTGTTTAGtgtgttttaatgtttttgccAACAATGCCTCTTTGGAGCGTCACATGAAACGACATTCAACGGATAAACCCTTTGCCTGCACAATATGTCAAAAGACTTTTGCCCGCAAAGAACATTTGGAAAATCATTTTCGTTCACACACTGGCGAGACCCCATTCCGGTGTCAATATTGTGCTAAAACATTCACACGCAAAGAGCACATGGTCAATCATGTCCGCAAGCATACGGGTGAGACACCACATCGTTGCGAAATCTGCAAGAAATCATTTACGCGCAAAGAACACTATGTTAATCACTATATGTGGCATACTGGTCAAACGCCACACCAATGTGAAGTATGTGGTAAAAAGTATACACGCAAAGAACATTTGGCAAACCATATGCGTTCGCACACAAATGACACACCGTTTCGCTGTGAAATTTGTGGCAAAAGTTTTAGTCGTAAGGAGCATTTTACTAATCATATATTGTGGCATACAgGTGAAACACCTCATCGTTGTGATTTCTGTTCGAAAACGTTTACCCGTAAGGAACATTTGTTAAATCATGTACGTCAACATACTGGCGAGTCGCCGCATCGTTGTACATACTGTATGAAAACGTTTACGCGCAAAGAACATTTGGTCAATCACATACGGCAGCATACTGGCGAGACACCTTTCAAGTGCACTTACTGCACTAAGGCCTTCACCCGAAAAGATCACATGGTCAATCATGTGCGGCAGCATACAGGCGAATCACCACATAAGTGTACATTTTGTACAAAAACGTTTACACGCAAAGAACATTTAACGAATCATGTACGCCAACATACTGGCGAATCACCGCATCGTTGCACCTATTGCAAGAAAACCTTCACTCGCAAAGAACATCTAACGAATCATACACGTTTGCATACTGGTGATTCGCCGCACAAGTGTGAATATTGCCAGAAAACATTCACACGCAAAGAACATCTCAACAATCATATGCGTCAACATTCTAGTGATAATCCACACTGTTGCAATGTCTGTAACAAACCATTTACGCGCAAAGAACATTTAATAAATCACATGTCGCGATGTCACACCGGTGATCGGCCATTTGCATGCGAAACTTGTGGAAAATCCTTTCCACTTAAGGGAAATTTACTCTTCCATCAACGTAGTCATACTAAGGGCCAAGAAATGGAAAGACCATTTTCGTGCGAAAAATGCccgaaaacatttatttgtaaaggaCATTTGGTTTCGCATATGCGTTCTCATTCAGGTGAGAAACCACACGCTTGCACTTTATGTAGTAAAGCATTCGTAGAAAGAGGTAATTTAAAACGTCATATGAAAATGAATCATCCAAATGCTCCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCTCAaattaaacaagaaataaaaccaGTTATCACTGAATTGaATTCGCTTCAAAATTCTGGTCCAACAATGCATACAATACAACAAATAACAGCGGTACCATCCGCCAATACGGTGCAACTAACAACGGGCTTAACGCCTTTAGTAACATCAACTATAACATCGCATGCTGCACAGAAACAAGCGACACAGCCACAAGTGCAACAAAATCCgctgcaacaacagcaacaacatgtAGTAAGTACAcaccaacagcagcagcaacaacagcagcagcagcaacaggtGACAGCTCATCAACAAGTcttgcaacagcagcagcaacaacaacaacagcaacatcagcAAAATCAATTATTGCAGTTGTCTATACAACAGGCAGCTGCGGCTGCAGCCCATCAGCAaatacaacaacagcagcatcaAGATCAACAACGCCAACACCATcaccaacagcagcagcagaCCCAACAACAAGCTCATCATCAACAACAACCAGCTTCAAATGTTACTGTCGTTACGAGTGCTcaccaacagcagcagcagcagcaacaacaacaacagcagcagcaacaacaacaacaacagccatCTCAGCAACAACCACAAACTCAACAGCAATCACCGCAAGTGCCAATCGCTTTATTACAACCTGACCAGGAGGCTTTGGCTCGTGCGGCCATGCAATTACAGCACATGCCCGCTAATGTTGAACAACATCCAGTTGTGtactaa
Protein Sequence: MNTENATTPGESTTAATLSNTTTTTVSAVTTSNGYDPQQQNRHSPLQQQQQQTQLNESRDILTVVQPPNQIPQQYMSSPNVNRTGDGSGINHIRSPLTLSPKATTTPTTIGVEHKNVITQQQTIATTNSSSSLQTTGDVGTVPVAVPMSTTLVSAHDPHLLNHHHYQQHIHHHVSPASGAPLLLTSSGPSTSTSTTGTLLANNPPNLGKYWVVTNLFQGAHGQGPQYNEGGITHTQTSIAGVPSSTLVRAISTTAGSTTVVTKTEAVSSSAGTLQIPHTQMLSQAGITQQLPNGTIITTQSQQQQHRHLAEHQQQQQQQQQQQLHVHGLNNNPEDSRQQQQQLGQQQHVAVLQSGVDIKDEKPFDSNGKISATNQQIIMQHISTGGASSGNPSTSGATTITLGTPKTEIKDDGSVVMSGKLHPGIEMYKVNIEDISQLFTYHEVFGKLHGDVMNHPLAAASQASLAATANSNMATAVSTATSSAAEVNNTTGVPVAANSVAITESTNTSSVGAGVVATTSTIATNSNSIATASSTATGVAPGGLLMPKMEGGITSVEQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHTRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVITELNSLQNSGPTMHTIQQITAVPSANTVQLTTGLTPLVTSTITSHAAQKQATQPQVQQNPLQQQQQHVVSTHQQQQQQQQQQQQVTAHQQVLQQQQQQQQQQHQQNQLLQLSIQQAAAAAAHQQIQQQQHQDQQRQHHHQQQQQTQQQAHHQQQPASNVTVVTSAHQQQQQQQQQQQQQQQQQQQPSQQQPQTQQQSPQVPIALLQPDQEALARAAMQLQHMPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236968;
90% Identity: -
80% Identity: -