Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000080.1:458509-472231[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.8e-06 0.00048 20.6 1.3 1 23 612 634 612 634 0.97

2 15 0.00019 0.0092 16.6 0.5 1 23 640 662 640 662 0.97

3 15 8.3e-05 0.0041 17.7 0.6 1 23 668 690 668 690 0.98

4 15 6.2e-06 0.00031 21.3 3.0 1 23 696 718 696 718 0.97

5 15 8.3e-05 0.0041 17.7 4.7 1 23 724 746 724 746 0.99

6 15 0.00014 0.0071 17.0 5.6 1 23 752 774 752 774 0.97

7 15 7.1e-07 3.5e-05 24.2 4.3 1 23 780 802 780 802 0.98

8 15 2.7e-07 1.3e-05 25.6 2.4 1 23 808 830 808 830 0.97

9 15 0.00016 0.0076 16.9 6.7 1 23 836 858 836 858 0.97

10 15 0.00026 0.013 16.2 6.6 1 23 864 886 864 886 0.98

11 15 1.6e-06 7.8e-05 23.1 7.7 1 23 892 914 892 914 0.98

12 15 0.0005 0.024 15.3 9.5 1 23 920 943 920 943 0.95

13 15 0.00042 0.021 15.5 0.5 1 23 949 971 949 971 0.97

14 15 0.00043 0.021 15.5 4.7 1 23 981 1003 981 1003 0.98

15 15 2.2e-05 0.0011 19.5 1.6 1 23 1009 1032 1009 1032 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.8e-06	0.00048	20.6	1.3	1	23	612	634	612	634	0.97
2	15	0.00019	0.0092	16.6	0.5	1	23	640	662	640	662	0.97
3	15	8.3e-05	0.0041	17.7	0.6	1	23	668	690	668	690	0.98
4	15	6.2e-06	0.00031	21.3	3.0	1	23	696	718	696	718	0.97
5	15	8.3e-05	0.0041	17.7	4.7	1	23	724	746	724	746	0.99
6	15	0.00014	0.0071	17.0	5.6	1	23	752	774	752	774	0.97
7	15	7.1e-07	3.5e-05	24.2	4.3	1	23	780	802	780	802	0.98
8	15	2.7e-07	1.3e-05	25.6	2.4	1	23	808	830	808	830	0.97
9	15	0.00016	0.0076	16.9	6.7	1	23	836	858	836	858	0.97
10	15	0.00026	0.013	16.2	6.6	1	23	864	886	864	886	0.98
11	15	1.6e-06	7.8e-05	23.1	7.7	1	23	892	914	892	914	0.98
12	15	0.0005	0.024	15.3	9.5	1	23	920	943	920	943	0.95
13	15	0.00042	0.021	15.5	0.5	1	23	949	971	949	971	0.97
14	15	0.00043	0.021	15.5	4.7	1	23	981	1003	981	1003	0.98
15	15	2.2e-05	0.0011	19.5	1.6	1	23	1009	1032	1009	1032	0.96

Sequence Information

Coding Sequence: ATGAATACTGATAATGCaattgctaatgcaacaactcctggtgagtcaacaacagcggcagcagcagcaacattatcaaatacagctaccacaactgtttcagcagttgcaacatcaaatggctatgatccgcaacagcaacaaaatcgtcattcgcctttgcaacaacaacaacaacagcagcagcaacaacaATCCCAATTAAATGAGTCGCGTCATATTTTAACTGTTGTTCAACAACCAAATCAAACATCTCCACACTATATGTCTACGCCGAATGTTAATGGTAACCAAAGTGGTACTACGGGCGGTGGTATAAACCACATAACGACCACACCGATATCCTTAACAATGTCATCAACGACGACAACAACACCATCAACAATTGTTGAGCATAAACATATAATAAACCATCAACCAACTATAACTTCCACAAATCCGACAACAACAACACCATCTACTGGGGATGTGGCTTCTAGTTCAGTTGTTGTGCCCATGAGCACCACTTTAGTGTCTGCACATGATACACATTTGCTGCATCATCATCACCATCAGCATCATCTACATCATAATGTAAATCAAGCTGCAAGCTCGCCTTTGTTGCTTAGTAGTGCTGGTCCTACAACTCCAACGTCTACAACGGGAACACTGTTAGCCAATAATTCACAAAATTTGGGTAAATATTGGGTTGTGACAAACTTTCAAGGAGCGCCAGGTCAAGCGGCTCAATATAACGTGGCAGGTATAACGCACACACAAACATCTATagcaggagtgccttcatcaacattagtgcgtgctatatccacaactgccggcagcccaaccgtggttacaaaaaccgaggcagtttctagcagtgcgggaacgctgcaaataccacaaacccaaatgttatctcaagcgggaataggacaacaactgccaaatggcaccattataacaacacaggcacagcagcaacaacaacagcagcagcaaaggcatgtagcagaacatcagcagcagcagcaacaacaacagcagcagcagcagcaacagttgcatgttcatgccttaaataatgcagaggataatcgtcagcaacaacaacaacagcagcaacaacagatgagccaacaacagcaacaacatgttgctgttttacaatcaagcgatcaGGCCATAAAAGACGAAAAACCTTTCGCTTCCAATGGCAAAATAACTGCAACCAATCAACAGATCATTATGCAGCACATATCAACTGCAGCATCCTCTGGCAGCCCGGCTACCTCTGGGGCCACTACCATAACACTAGGTGCACCCAAAACAGAAATTAAAGATGATGGTAGCGTAGTCATGAGCGGAAAATTACATCCCGGCATTGAAATGTATAAAGTAAATATCGAAGATATATCTCAACTATTTACCTATCATGAGGTTTTTGGTAAACTACACGGTGATGTTATGAATCATCCCTTGGCAGCAGCTCATGCATCCTTACCATCTACTGCAAATAGTAATATTGCTGCAGCGGTTTCTGCCACTACCACAAGTGCGGCTGAGGTTAATAATACAACTGGTGTAACTGTGGTAACCAATAGTGTCCCTATAACAGAATCCACCAGTACAAGTACTGTAGGTTCGGCTGGTGTGGTTGCTACAACTAGTACAGCGGCTAACTTAACAACAGCCATTGCTACAAACGCCAATACTGCAGTAACATCTACTGCAACGACTGCTGGTGTGACTGCTGGTGGCCTGCTAATGCCGAAAATGGAAGGGGGTATTGCAAATGTAGACCAAAATACTGTTACTTTAGCGCCCGACGGCACAGTAGTGTCTACCGGTGAACATGTTTGCGACATATGCGGAAAAATGTTTGCCTTCCGCTATCAGTTAATCGTTCATCGTCGTTACCACACTGAACGTAAACCTTTCAATTGTCAAGTCTGTGGTCAGGGCTTTTTTACCTCACAGGATCTTACACGGCATGGCAAGATACATATCGGTGGACCAATGTTTACTTGTTTGGTGTGTTTCAATGTTTTTGCCAACAATGCCTCTTTGGAGCGTCACATGAAGCGCCATTCAACGgacaaaccatttgcctgcacgatatgtcagaaaacatttgcccgcaaagaacatttggaaaatcatttccgctcgcacactggtgaaaccccattccggtgccaatattgtgctaaaacatttacacgcaaagagcacatggtaaatcatgtgcgtaagcacacgggagagactccgcatcgttgcgaaatctgtaagaaatcatttacgcgcaaagaacactatgttaatcactatatgtggcacactggtcaaacacctcatcaatgcgaagtatgtggtaaaaagtatacacgtaaagaacatttagcaaatcatatgcgttcgcatacaaatgatacaccatttcgttgcgaaatttgtggcaaaagttttagtcgtaaagagcattttactaatcacatATTATGGCATACAGgagaaactcctcatcgctgtgatttctgttcgaaaacttttacgcgtaaagaacatttattgaatcatgtacgtcaacatactggggaatcaccgcatcgttgtacatactgcatgaaaacgtttacgcgcaaagaacatttagtcaatcatatacgtcaacacactggtgattcgccgcacaagtgtgaatattgtcagaaaaccttcacacgcaaggaacatctcaacaatcacatgcgtcaacattctagtgataatccacattgttgcaatgtctgcaacaaaccatttacgcgcaaagaacatttgataaatcacatgtcccgctgccatacgggtgatcggccatttgcctgtgaaacatgtggaaaatcatttccgcttaagggtaatttaCTCTTCCATCAACGTAGTCATACTAAGGGTCAAGAAATGGAAAGACCATTTACGTGCGAAAAATGTCCCAAAACATTTATTTGCAAAGGACATTTGGTATCCCACATGCGCTCTCACTCCGGCGAGAAACCGCATGCTTGTACATTATGTAGTAAAGCGTTTGTCGAAAGAGGAAATTTGAAGCGTCACATGAAAATGAATCACCCAAATGCTCCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCTCAAATTAAACAGGAAATTAAACCAGTTATCAGTGAATTAAATCCTCTacaaacttcagctccaaccatgcataccatacaacaaataacagcaggagcagcggcaaatacagtgcaactaacaacgggtttgacgcctttagtaacgtcaactataacatctcatgctacacaaaaacaagcgacacagccgcaaacacaagtgcagcaacaacaattgcaacaacagcagcaacaacaagtagtaactacacaccagcaacagcagcagcaacaacaacagcagcagcagcaacaacaggtgacagcacatcaacaagttttacaacagcagcaacaacaacagcaccagcaaaatcaattattacaattgtctatacagcaagcagctgcggctgcagctcatcagcaaatacaacaacagcagcagcaacagcagcagcagcagcaacaacagcatcaagagcaacaacgccaacatcatcatcaacagcagcagcagcagcaacaacaacagcagactcaacagcaagcccatcatcaacaacagcaaacagcttcaaatgttactgtcgttgctgccgctcaccaacaacagcaacaacagccatctcaacaacagcaaacacaaactcaacagcaaccaccacaagtgccaatcgctttgatacaaaccgatcaggaagctttggcccgtgccacaatgcaacaattgcagcatatgcccgctaatgttgaacaacatcccgttgtttactaa
Protein Sequence: MNTDNAIANATTPGESTTAAAAATLSNTATTTVSAVATSNGYDPQQQQNRHSPLQQQQQQQQQQQSQLNESRHILTVVQQPNQTSPHYMSTPNVNGNQSGTTGGGINHITTTPISLTMSSTTTTTPSTIVEHKHIINHQPTITSTNPTTTTPSTGDVASSSVVVPMSTTLVSAHDTHLLHHHHHQHHLHHNVNQAASSPLLLSSAGPTTPTSTTGTLLANNSQNLGKYWVVTNFQGAPGQAAQYNVAGITHTQTSIAGVPSSTLVRAISTTAGSPTVVTKTEAVSSSAGTLQIPQTQMLSQAGIGQQLPNGTIITTQAQQQQQQQQQRHVAEHQQQQQQQQQQQQQQLHVHALNNAEDNRQQQQQQQQQQMSQQQQQHVAVLQSSDQAIKDEKPFASNGKITATNQQIIMQHISTAASSGSPATSGATTITLGAPKTEIKDDGSVVMSGKLHPGIEMYKVNIEDISQLFTYHEVFGKLHGDVMNHPLAAAHASLPSTANSNIAAAVSATTTSAAEVNNTTGVTVVTNSVPITESTSTSTVGSAGVVATTSTAANLTTAIATNANTAVTSTATTAGVTAGGLLMPKMEGGIANVDQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFTCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVISELNPLQTSAPTMHTIQQITAGAAANTVQLTTGLTPLVTSTITSHATQKQATQPQTQVQQQQLQQQQQQQVVTTHQQQQQQQQQQQQQQQVTAHQQVLQQQQQQQHQQNQLLQLSIQQAAAAAAHQQIQQQQQQQQQQQQQQHQEQQRQHHHQQQQQQQQQQQTQQQAHHQQQQTASNVTVVAAAHQQQQQQPSQQQQTQTQQQPPQVPIALIQTDQEALARATMQQLQHMPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236968;
90% Identity: -
80% Identity: -