Gang011352.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- -
- Assembly
- GCA_963681545.1
- Location
- OY812999.1:35375543-35384937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.3e-06 0.001 20.6 1.3 1 23 563 585 563 585 0.97 2 18 0.00016 0.02 16.6 0.5 1 23 591 613 591 613 0.97 3 18 7.1e-05 0.0089 17.7 0.6 1 23 619 641 619 641 0.98 4 18 5.3e-06 0.00067 21.2 3.0 1 23 647 669 647 669 0.97 5 18 7e-05 0.0089 17.7 4.7 1 23 675 697 675 697 0.99 6 18 0.00012 0.015 16.9 5.6 1 23 703 725 703 725 0.97 7 18 6.1e-07 7.6e-05 24.2 4.3 1 23 731 753 731 753 0.98 8 18 2.3e-07 2.8e-05 25.5 2.4 1 23 759 781 759 781 0.97 9 18 0.00013 0.017 16.8 6.7 1 23 787 809 787 809 0.97 10 18 0.00022 0.028 16.2 6.6 1 23 815 837 815 837 0.98 11 18 2e-05 0.0026 19.4 4.5 1 23 843 865 843 865 0.98 12 18 7.7e-05 0.0096 17.6 8.3 1 23 871 893 871 893 0.98 13 18 3.8e-06 0.00048 21.7 7.7 1 23 899 921 899 921 0.98 14 18 1.4e-06 0.00017 23.1 7.7 1 23 927 949 927 949 0.98 15 18 0.00042 0.053 15.3 9.5 1 23 955 978 955 978 0.95 16 18 0.00036 0.045 15.5 0.5 1 23 984 1006 984 1006 0.97 17 18 0.00052 0.065 15.0 4.5 1 23 1016 1038 1016 1038 0.98 18 18 1.9e-05 0.0024 19.5 1.6 1 23 1044 1067 1044 1067 0.96
Sequence Information
- Coding Sequence
- atgagcactgaaaatgcaaatacaaatacaGCAACTCCTGGTGagtcaacaacagcagcaagaTTATCAAATACAACCGCGACAGCTGTTTCAGCAGTTACAACATCAAATGGCTATGATCCGCAGCAACAAAATCGTCATTCACCtttgcaacagcagcaacagcaaactCAATTAAATGAGTCGCGTGATATTTTAACTGTTGTCCAACCACTAAATCAAACTATTCAACAATACATGTCGACTCCAAATGTAAATAATGGCAATGATGGTCGAAAGACGACAACAACGGCATCTGCAATTGTTGTTGAACATAAAAATGCTACAACGCAACAACAAATTATAACCTCTACGAATTCCACGACGACGCTACCAACAAGTGGTGATGTTATTTCTAGTCAAGTTGGTGCATCCATGAACACTACTACGTTGGTGTCTGCACATGATCCACATTTGGTAAATCATCACCACCATCAACAACATGTACATCATGGAACCCATATTTCAGCCACCCCTTTGTTGGTTAGTAGTTCTGGGCTTTCAACTTCAACAGCACCCACAGCAACAATTTTAGACAATAATTCACAAAATTTGGGTAAATATTGGGTCGTGACAAACTTCTTTCAGGGAGCGCCTGGTCAAGCAGCTCAATATAACGAGGGTGATATAACCCACACTCAGACATCTATAGCAGGAGTGCCTTCATCGACATTAGTTCGTGCTATATCTACAACAACAGGTACTACAACAGTAGTAACAAAAACTGAAGAAGAGTCTAGCGGTGCAGGAACACTGCAAATATCACAAGCTCAAATGCTATCGCAGGCGGGTATAACGCAACAACTGCCAAATGGCACCATTATAACAACGCAATCACAGCAGCAGGAACAAAGACATGTGACAGaacatcagcaacaacaacagttgCATACGCACGCCTTAAATAATGCAGAGGATAATCGTCAACAACTAGgtcaacagcaacaattaaGTCAACAACAACATGTTGCTGTACTACAGTCAAGCGATGCCATAAAAGATGAGAAACCTTTTGCTTCAAATGGCAAAATATCTGTAGCAAATCAACAGATTATTATGCAGAATATCTCAGCGGCAGCATCTTCTGGAAATCCGTCTACCTCGGGTGCTACTACAATTACTCTGGGCGCCCCTAAAACGGAAATTAAAGACGAAGGCAGCGCTGCCATGGGCGGAAAACTACACTCTGGCATTGAAATGTATAAAGTTAATATTGAGGATATATCGCAATTATTTACCTATCATGAAGTTTTCGGTAAACTTCACGGCGATGTCATGAATCATCCATTGGCTGCAGCCCATGCATCGTTACCAGCAACTGCAAATAGTAACATTTCTACATCTGTATCTGCAGTCACATCTAGTGCGACGGGGGGAAATAACACAACTGGGGTTCCTGTGGTAGCCAATAGCGTTGCTATAACAGAATCCACAAATACTAGTTCAGTCGGTACAAGTATTATGGCTACAACCAGTTCAGGGGCAAACTTAGGAACAGCCATTGTTACAAATTCCAATGCTGTGGCAGGCACTACTTCCACAACTACAGGTGTTGCTCCTGGTGGGTTGTTAATGCCCAAAATGGAAGGTGGTATTACAAGTGCTGTTACTTTAGCTCCAGATGGTACAGTAGTTTCAACTGGTGAACATGTGTGCGACATATGCggaaaaatgtttgcttttcgCTATCAGTTAATAGTACATCGTCGTTACCACACTGAACGTAAACCATTTAATTGCCAAGTCTGCGGCCAGGGGTTTTTCACTTCTCAGGATCTTACTAGACATGGAAAAATTCATATTGGTGGACCTATGTTTACCTGTTTAGtgtgttttaatgtttttgccaacaacgCCTCTTTGGAGCGTCACATGAAGCGGCATTCAACAGATAAACCCTTTGCTTGCACAATATGTCAAAAGACTTTTGCCCGCAAAGAACATTTGGAAAATCACTTTCGCTCGCACACTGGCGAAACCCCATTTCGTTGTCAGTATTGTGCTAAAACGTTCACACGCAAAGAACACATGGTAAATCATGTCCGCAAACATACGGGAGAGACACCACATCGTTGCGAAATCTGCAAGAAATCATTTACGCGCAAGGAACACTATGTCAATCATTACATGTGGCATactggtcAGACACCACATCAATGTGAAGTTTGTGGCAAAAAGTACACACGGAAAGAACATTTAGCAAATCATATGCGTTCGCACACAAATGATACACCGTTTCGTTGCGAAATTTGTGGCAAAAGTTTTAGTCGTAAAGAGCATTTCACTAATCACATATTGTGGCACACaggAGAAACTCCTCATCGCTGTGATTTTTGTTCCAAAACATTTACGCGTAAGGAACATTTATTAAATCATGTGCGCCAACATACTGGCGAATCGCCGCATCGTTGTACATATTGTATGAAAACGTTTACGCGCAAAGAACATTTAGTCAATCATATAAGGCAGCATACTGGCGAAACGCCTTTTAAATGCACTTACTGCACCAAGGCCTTCACCCGAAAAGATCATATGGTCAACCATGTACGCCAACATACAGGTGAATCACCACATAAGTGTACATTCTGTACAAAGACATTTACGCGAAAAGAACATTTAACGAATCATGTACGTCAACATACTGGTGAATCACCGCACCGTTGTAGCTATTGCAAGAAAACTTTTACTCGCAAAGAGCATCTAACAAATCATATACGTTTGCACACTGGCGATTCGCCGCACAAGTGTGAATATTGTCAAAAAACATTTACACGGAAAGAACATCTCAACAATCATATGCGTCAACATTCTAGTGACAATCCACATTGTTGCAATGTCTGCAATAAACCATTTACGCGCAAAGAACATTTAATAAATCACATGTCTCGCTGCCACACCGGTGATCGCCCATTTGCATGTGAAACTTGTGGGAAATCCTTTCCACTTAAGGGAAATTTGCTCTTCCACCAACGTAGTCATACTAAGGGTCAAGAAATGGAAAGACCATTTTCGTGTGAAAAATgtccaaaaacatttatttgtaaaGgacATTTGGTTTCACATATGCGTTCTCACTCGGGCGAGAAACCACATGCTTGCACTTTATGTAGTAAAGCATTTGTGGAAAGAGGTAACTTAAAACGCCACATGAAAATGAATCATCCAAATGCTCCAATGCCGCCACCTCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCTCaaattaaacaagaaataaaaccaGTTGTCAGTGAATtgaATTCGCTCCAAACTGCTGCTCCAACTATGCATACCATACAACAAATAACAGGAGGAGCATCTGCAAATACAGTGCAAATAGCAACAGGTTTAACGCCTTTAGTAACGTCAACTATAACATCGCATACTACGCAGAAGCAGACGATACAGACCCAAGCTCAAGTACAGCAAAATCCaatgcaacaacagcaacaagtaGTAACTTCAcaccaacagcagcaacaagtGGCAGCTCATCAACAGGCtatgcagcagcaacagcaacagcagcaacaacaacagcagcaacaacaacaacagcaacaccaGCAAAATCAATTATTGCAGTTGTCAATACAACAGGCAGCGGCTGCTGCTGCAGCCCATCAGCAAATCCAACAACAGCATCAAGACCAGCAGCGCCAACATCAccatcaacagcagcagcaacaacaagctCACCATCAACAGCAAACAACTTCAAATGTCACTGTCGTTGCTAGTGCtcatcaacaacagcagcaacaacaacaacaacagcagccatctcaacaacaaacacaaactcaACAGCAACCACCAGTGCCAATTGCTTTAATACAAACGGATCAGGAAGCTTTGGCCCGTGCAACCATGCAACAATTGCAGCACATGCCCGCTAATGTTGAACAACATCCAGTTGTAtactaa
- Protein Sequence
- MSTENANTNTATPGESTTAARLSNTTATAVSAVTTSNGYDPQQQNRHSPLQQQQQQTQLNESRDILTVVQPLNQTIQQYMSTPNVNNGNDGRKTTTTASAIVVEHKNATTQQQIITSTNSTTTLPTSGDVISSQVGASMNTTTLVSAHDPHLVNHHHHQQHVHHGTHISATPLLVSSSGLSTSTAPTATILDNNSQNLGKYWVVTNFFQGAPGQAAQYNEGDITHTQTSIAGVPSSTLVRAISTTTGTTTVVTKTEEESSGAGTLQISQAQMLSQAGITQQLPNGTIITTQSQQQEQRHVTEHQQQQQLHTHALNNAEDNRQQLGQQQQLSQQQHVAVLQSSDAIKDEKPFASNGKISVANQQIIMQNISAAASSGNPSTSGATTITLGAPKTEIKDEGSAAMGGKLHSGIEMYKVNIEDISQLFTYHEVFGKLHGDVMNHPLAAAHASLPATANSNISTSVSAVTSSATGGNNTTGVPVVANSVAITESTNTSSVGTSIMATTSSGANLGTAIVTNSNAVAGTTSTTTGVAPGGLLMPKMEGGITSAVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVVSELNSLQTAAPTMHTIQQITGGASANTVQIATGLTPLVTSTITSHTTQKQTIQTQAQVQQNPMQQQQQVVTSHQQQQQVAAHQQAMQQQQQQQQQQQQQQQQQQHQQNQLLQLSIQQAAAAAAAHQQIQQQHQDQQRQHHHQQQQQQQAHHQQQTTSNVTVVASAHQQQQQQQQQQQPSQQQTQTQQQPPVPIALIQTDQEALARATMQQLQHMPANVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01236968;
- 90% Identity
- -
- 80% Identity
- -