Basic Information

Insect: Phormia regina
Gene Symbol: -
Assembly: GCA_001735585.1
Location: MINJ01169475.1:20012-24547[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7e-06 0.00073 20.8 1.3 1 23 552 574 552 574 0.97

2 18 0.00013 0.014 16.8 0.5 1 23 580 602 580 602 0.97

3 18 6e-05 0.0063 17.9 0.6 1 23 608 630 608 630 0.98

4 18 4.5e-06 0.00047 21.4 3.0 1 23 636 658 636 658 0.97

5 18 5.9e-05 0.0063 17.9 4.7 1 23 664 686 664 686 0.99

6 18 0.0001 0.011 17.1 5.6 1 23 692 714 692 714 0.97

7 18 5.1e-07 5.4e-05 24.4 4.3 1 23 720 742 720 742 0.98

8 18 1.9e-07 2e-05 25.8 2.4 1 23 748 770 748 770 0.97

9 18 0.00011 0.012 17.1 6.7 1 23 776 798 776 798 0.97

10 18 0.00019 0.02 16.3 6.5 1 23 804 826 804 826 0.98

11 18 1.7e-05 0.0018 19.6 4.5 1 23 832 854 832 854 0.98

12 18 6.5e-05 0.0068 17.8 8.3 1 23 860 882 860 882 0.98

13 18 3.2e-06 0.00034 21.9 7.7 1 23 888 910 888 910 0.98

14 18 1.1e-06 0.00012 23.3 7.7 1 23 916 938 916 938 0.98

15 18 0.00036 0.038 15.5 9.5 1 23 944 967 944 967 0.95

16 18 0.0003 0.032 15.7 0.5 1 23 973 995 973 995 0.97

17 18 0.0006 0.063 14.8 4.3 1 23 1005 1027 1005 1027 0.98

18 18 1.6e-05 0.0017 19.7 1.6 1 23 1033 1056 1033 1056 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7e-06	0.00073	20.8	1.3	1	23	552	574	552	574	0.97
2	18	0.00013	0.014	16.8	0.5	1	23	580	602	580	602	0.97
3	18	6e-05	0.0063	17.9	0.6	1	23	608	630	608	630	0.98
4	18	4.5e-06	0.00047	21.4	3.0	1	23	636	658	636	658	0.97
5	18	5.9e-05	0.0063	17.9	4.7	1	23	664	686	664	686	0.99
6	18	0.0001	0.011	17.1	5.6	1	23	692	714	692	714	0.97
7	18	5.1e-07	5.4e-05	24.4	4.3	1	23	720	742	720	742	0.98
8	18	1.9e-07	2e-05	25.8	2.4	1	23	748	770	748	770	0.97
9	18	0.00011	0.012	17.1	6.7	1	23	776	798	776	798	0.97
10	18	0.00019	0.02	16.3	6.5	1	23	804	826	804	826	0.98
11	18	1.7e-05	0.0018	19.6	4.5	1	23	832	854	832	854	0.98
12	18	6.5e-05	0.0068	17.8	8.3	1	23	860	882	860	882	0.98
13	18	3.2e-06	0.00034	21.9	7.7	1	23	888	910	888	910	0.98
14	18	1.1e-06	0.00012	23.3	7.7	1	23	916	938	916	938	0.98
15	18	0.00036	0.038	15.5	9.5	1	23	944	967	944	967	0.95
16	18	0.0003	0.032	15.7	0.5	1	23	973	995	973	995	0.97
17	18	0.0006	0.063	14.8	4.3	1	23	1005	1027	1005	1027	0.98
18	18	1.6e-05	0.0017	19.7	1.6	1	23	1033	1056	1033	1056	0.96

Sequence Information

Coding Sequence: atgacATTACAGTCTCGTGATATTTTAACTGTTGTCCAAACGCCTAATCAAACGCCTGAACATTACATGTCTACGCCAAATGTTAATAGCAACCAAAATGGTAATGGTGGTGGTATTAATCAAATAACACCATCACCAATACCCTTAACTTTATCCGCGGCAACGACGCCTACAACAACACCAACACCCTCAACAATTGTTGTTGAGCAAAAACATGTTATAACACAACAACCAACTATAACTTCACCAAATCCAACAACGGCCACACCTTCAAATGGAGATGGAGTTACTAGTCCAGTGGTTATACCCATGAACACCACTTTGGTATCTGCACACGATCCACATATGCTGCATCATCAtcaccaccatcatcatcagcatcacGTACACCATCAAAATATAAATCAGTCTACAGGCACATCTTTGCTGATTAGTAATTCTGGTCCTATGGCTCCAACACCACCTACAACTGCCACACTTTTATCCAATAATTCACAAAATttGGCAAAATATTGGGTTGTGCCAAACTTGTTTCAAGGAGGGCCAAGTCAAGCGGCTCAATATAACGAAGGAAGTGTAGTAACGCACACCCAAACATCAATAGCAGGAGTGCCTTCATCAACATTAGTGCGTGCTATATCCACAACGGTGGGCAGTCCAACGGTGGtaactaaaactgaagaagTATCAAACAGTGCGGGAACACTGCAATTACCACAAACACAAATGTTAACACAGGCTGGAATAGGACAACAGCTGCCAAATGGCACTATAATAACAACACAGGCACAACAGCAGCAAAGACATGTAACAGAAcatcagcaacagcaacaacaattgcaTGTtcatactttaaataatgcTGAGGATAATcgtcaacaacaacagcagcagcagcaaataagtcaacagcaacaacaacatcaagtAGCTGTATTACAAACAGGCGAGACCATAAAAGATGAAAAACCCTTCGCTTCAAATGGCAAAATAAATGCCACAAATCAACAGATAATTATGCAGCACATATCGACGGCAGCATCATCAGGCAGCCCGGCTACCTCGGGAGCTACTACCATAACGTTAGGAGCACCTAAAACGGAAATAAAAGATGATGGTAGTGTAGTTATAAGTGGAAAACTTCATCCAGGCATTGAAatgtataaagttaatattgaaGATATATCTCAACTATTTACCTATCATGAGGTATTTGGTAAACTTCACGGTGATGTTATGAATCATCCATTGGCGGCTGCTCATGCAGCCTTACCAGGTGCTGTAAATACCAATATTGCGGCAACTGTTTCAGCTACCACCACCACTAGTGCTGCTGAGGTAAATAACGCTACAGGAGCTGGAGGTGGTGGAGGGGGAGGAGTTAATGTGGTAACCAATAGTGTCCCTATAACGGAAGCTACTAGTACTAGTACTGTAGGCGCTGGAGTTGTGGCTACCACCAGTACAGCAGCAAATCTTACGACAGCTATAGCAACAAATACCAATACGGCTGCAACTGCAACGGCTACCACTGCTGCAGGAGGTGGTGTAACAACAACTGGTTTGCTTATGCCCAAAATGGAAAGTATTGCAAATATGGACCAAAACACCGTTACTTTAGCGCCCGATGGTACTGTAGTATCGACTGGTGAACATGTTTGTGATATATGCGGTAAAATGTTTGCTTTCCGTTATCAATTAATTGTTCATCGTCGTTATCATACCGAACGTAAGCCTTTCAATTGTCAAGTGTGTGGACAGGGCTTTTTCACGTCTCAGGATCTTACGCGTCATGGCAAGATACATATTGGTGGACCAATGTTTACTTGTTTAGTGTGTTTCAATGTTTTTGCCAATAATGCCTCTTTGGAACGTCACATGAAACGTCATTCGACAGACAAACCGTTTGCCTGTACCATTTGTCAAAAGACTTTTGCTCGCAAAGAACATTTGGAAAATCATTTTCGTTCGCATACCGGTGAGACTCCCTTCCGGTGTCAATATTGTGCTAAAACTTTTACACGCAAAGAGCATATGGTCAATCATGTGCGTAAACATACGGGCGAAACACCACATCGCTGCGAAATTTGTAAGAAATCATTTACGCGCAAAGAACATTATGTAAATCACTATATGTGGCACACTGGTCAAACACCACATCAATGTGAAGTTTGTGGTAAAAAATATACACGCAAAGAACATTTAGCAAATCATATGCGTTCGCATACTAATGATACACCATTTCGTTGCGAAATATGTGGCAAAAGTTTTAGTCGTAAAGAGCATTTTACTAATCATATATTATGGCATACaggtGAAACACCCCATCGTTGTGATTTCTGTTCGAAAACCTTCACACGCAAGGAACACTTATTGAATCACGTACGGCAACATACTGGTGAATCCCCACACCGTTGTTCGTATTGTATGAAAACATTTACGCGCAAAGAACATTTGGTCAATCACATACGTCAGCATACGGGTGAAACACCCTTTAAGTGCACTTATTGCACCAAAGCCTTTACTCGTAAAGATCATATGGTCAATCATGTGCGTCAACATACCGGTGAATCACCACATAAGTGTACATTCTGTACGAAAACGTTTACGCGCAAAGAACACTTAACGAATCATGTACGCCAGCATACCGGAGAATCTCCGCATCGTTGCAGCTATTGTAAAAAGACCTTTACACGTAAAGAACATCTTACGAATCATATACGTTTGCATACGGGTGATTCGCCGCACAAGTGTGAATATTGTCAAAAGACCTTTACGCGCAAAGAACATCTTAATAATCACATGCGTCAACATTCAAGTGATAATCCACATTGTTGTAATGTCTGCAATAAGCCATTTACGCGCAAAGAACATTTGATAAATCATATGTCCCGCTGCCATACAGGTGATCGTCCATTTGCATGTGAAACTTGTGGAAAATCTTTTCCACTCAAGGGTAATTTACTCTTCCATCAACGTAGTCATACAAAGGGACAGGAAATGGAGAGACCATTCGAGTGTGAAAAATGTCCAAAGAAATTCATTTGCAAAGGACATTTGGTATCACATATGCGCTCCCACTCAGGTGAGAAACCGCATGCTTGTACGTTGTGCAGTAAAGCCTTTGTGGAGAGGGGTAATTTAAAGCGTCATATGAAAATGAATCATCCAAATGCTCCCATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCtcaaattaaacaagaaataaaaccaGTTATCAGTGAaataaatgCATTACAAACAACAGCTCCAACAATGCATACTATACAACAAATAACAGCAGGAGCACCGGCAAATACAGTGCAACTAACAACAGTGCCAATCGCTTTAATACAAACCGATCAGGAAGCTTTGGCCCGTGCCACTATGCAACAATTGCAGCATATGCCAGCTAATGTTGAACAACATCCTGTTGTTTACTAA
Protein Sequence: MTLQSRDILTVVQTPNQTPEHYMSTPNVNSNQNGNGGGINQITPSPIPLTLSAATTPTTTPTPSTIVVEQKHVITQQPTITSPNPTTATPSNGDGVTSPVVIPMNTTLVSAHDPHMLHHHHHHHHQHHVHHQNINQSTGTSLLISNSGPMAPTPPTTATLLSNNSQNLAKYWVVPNLFQGGPSQAAQYNEGSVVTHTQTSIAGVPSSTLVRAISTTVGSPTVVTKTEEVSNSAGTLQLPQTQMLTQAGIGQQLPNGTIITTQAQQQQRHVTEHQQQQQQLHVHTLNNAEDNRQQQQQQQQISQQQQQHQVAVLQTGETIKDEKPFASNGKINATNQQIIMQHISTAASSGSPATSGATTITLGAPKTEIKDDGSVVISGKLHPGIEMYKVNIEDISQLFTYHEVFGKLHGDVMNHPLAAAHAALPGAVNTNIAATVSATTTTSAAEVNNATGAGGGGGGGVNVVTNSVPITEATSTSTVGAGVVATTSTAANLTTAIATNTNTAATATATTAAGGGVTTTGLLMPKMESIANMDQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFECEKCPKKFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVISEINALQTTAPTMHTIQQITAGAPANTVQLTTVPIALIQTDQEALARATMQQLQHMPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236968;
90% Identity: -
80% Identity: -