Basic Information

Insect: Pollenia labialis
Gene Symbol: -
Assembly: GCA_949318255.1
Location: OX439141.1:96663815-96701903[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 9e-06 0.0012 20.6 1.3 1 23 587 609 587 609 0.97

2 18 0.00017 0.024 16.5 0.5 1 23 615 637 615 637 0.97

3 18 7.7e-05 0.011 17.7 0.6 1 23 643 665 643 665 0.98

4 18 5.7e-06 0.00079 21.2 3.0 1 23 671 693 671 693 0.97

5 18 7.7e-05 0.011 17.7 4.7 1 23 699 721 699 721 0.99

6 18 0.00013 0.018 16.9 5.6 1 23 727 749 727 749 0.97

7 18 6.6e-07 9.1e-05 24.2 4.3 1 23 755 777 755 777 0.98

8 18 2.5e-07 3.4e-05 25.5 2.4 1 23 783 805 783 805 0.97

9 18 0.00014 0.02 16.8 6.7 1 23 811 833 811 833 0.97

10 18 0.00024 0.033 16.1 6.6 1 23 839 861 839 861 0.98

11 18 2.2e-05 0.0031 19.4 4.5 1 23 867 889 867 889 0.98

12 18 8.3e-05 0.012 17.6 8.3 1 23 895 917 895 917 0.98

13 18 4.1e-06 0.00057 21.7 7.7 1 23 923 945 923 945 0.98

14 18 1.5e-06 0.0002 23.1 7.7 1 23 951 973 951 973 0.98

15 18 0.00046 0.064 15.2 9.5 1 23 979 1002 979 1002 0.95

16 18 0.00039 0.053 15.5 0.5 1 23 1008 1030 1008 1030 0.97

17 18 0.00056 0.078 14.9 4.5 1 23 1040 1062 1040 1062 0.98

18 18 2e-05 0.0028 19.5 1.6 1 23 1068 1091 1068 1091 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	9e-06	0.0012	20.6	1.3	1	23	587	609	587	609	0.97
2	18	0.00017	0.024	16.5	0.5	1	23	615	637	615	637	0.97
3	18	7.7e-05	0.011	17.7	0.6	1	23	643	665	643	665	0.98
4	18	5.7e-06	0.00079	21.2	3.0	1	23	671	693	671	693	0.97
5	18	7.7e-05	0.011	17.7	4.7	1	23	699	721	699	721	0.99
6	18	0.00013	0.018	16.9	5.6	1	23	727	749	727	749	0.97
7	18	6.6e-07	9.1e-05	24.2	4.3	1	23	755	777	755	777	0.98
8	18	2.5e-07	3.4e-05	25.5	2.4	1	23	783	805	783	805	0.97
9	18	0.00014	0.02	16.8	6.7	1	23	811	833	811	833	0.97
10	18	0.00024	0.033	16.1	6.6	1	23	839	861	839	861	0.98
11	18	2.2e-05	0.0031	19.4	4.5	1	23	867	889	867	889	0.98
12	18	8.3e-05	0.012	17.6	8.3	1	23	895	917	895	917	0.98
13	18	4.1e-06	0.00057	21.7	7.7	1	23	923	945	923	945	0.98
14	18	1.5e-06	0.0002	23.1	7.7	1	23	951	973	951	973	0.98
15	18	0.00046	0.064	15.2	9.5	1	23	979	1002	979	1002	0.95
16	18	0.00039	0.053	15.5	0.5	1	23	1008	1030	1008	1030	0.97
17	18	0.00056	0.078	14.9	4.5	1	23	1040	1062	1040	1062	0.98
18	18	2e-05	0.0028	19.5	1.6	1	23	1068	1091	1068	1091	0.96

Sequence Information

Coding Sequence: atgaatattgATAATGCAATTGCAAATGTAACAACTCCTGGCGAGCCATCAACAGCAGCAACATTATCAAATTCAACTACAACAACTGTTTCAGCAGTAACAACATCAAACGGCTATGATTCTCAGCAACAAAATCGTCATTCTcctttacaacaacaacagcagcagcaacaacaaacgCATTTAAATGAGTCGCGAAATATTTTAACTGTTGTTCAACCGCCAAATCAGGCATCTCAACAATATATGTCGACGCAAAATATTATAAGTATTCAAAATGCCGGAGGTGGTGGCGCTCGTTCTGGTATTGGCCACTTATCGCCATCACCAATATCGTTAACTGCAACGACAGCACCTTCTTCTATTGTTGTTGAGCACAAGCATGTTGTAACGCATCAACCGACTATAACATCTACAAATTCCGCAACGACACAACCAACAACTGGGGGTGTTGCTTCTAGTTCTGTTGCTGTACCCATGAACACTACGTTAGTGTCTGCACATGAATCACATTTGCTGCATCACCATCAGCATCATGTGCATCATCATGTAAATCAAGCTGCTGGCACCCCGTTACTTCTAAGCAGTTCTGGTCATTCAACTCCAACCTCTACAACAGGAACACTTTTAGCCAATAATCCGCAAAATTTGGGTAAATATTGGGTTGTGACAAATTTGTTTCAAGGAGGGCCTGGTCAAGCGGCCCAATATAACGAAGGAGGTGTGAGCCACAGTCAGACATCTTTAGCAGAAGTGCCTTCATCAACATTAGTGCGTGCTATATCCACAACTGCAGGCAGCACAACAGTGGTAACAAAAACTGAGGCAGTTTCTAGCAGTGCGGGAACACTGCAAATACCACAAGCACAAATGTTATCGCAGGCGGGAATAACACAACAGTTGCCAAATGGCACCATTATAACAACACAGGCACAGCAACAACAACCGCAGCAGCAAAGACATGTGACGgaacatcagcaacaacaacagcagcaacagttGCATGTACATGAGGATAATCAtcagcagcaacagcaacaacaacagcaaatgaACCAACAGCAACATGTTGCTGTGCTACAAACAAGTGATAccataaaagaagaaaaaccttttatttcaaatggCAAAATAACGACAACAAATCAACAGATCATTATGCAGCATATATCAACTGCAGCAACTTCGGGTAGCCCGGCTAACTCGGGAGCTACTACTATTACTTTGGGTACTCCAAAAACGGAAATTAAAGACGATGGTAGTGTAGTGATGAGTGGAAAACTGCAACCTGGCATTGAAATGTATAAAGTAAATATTGAAGATATATCTCAACTGTTTACCTATCATGAGGTATTTGGTAAACTACACGGCGATGTAATGAATCATCCTTTGGCAGCAGCACATGCCGCATTACCAGCTGCCGCCAATAGTAATATAGCGTCAGTTGTAACTGCATCCACTACTAGTGCGAATGACGTCAATAATTCATCAGGCGCCACTGTAGTAACCAATAGTGTCCCTATAACAGAATCCACCAGTACGAGTTCGGTGGGTACTGGTGTAGTTGCTACCACTAGTACAGCGTCCAACTTAACAGCCATAGCAACAAACTCCAATACAGTAGCTACCGTTACTTCTACAGCAGCTGGTGTACCTCCTGCAGGCTTATTAATGCCAAAAATGGAGGGAGGCATTACTAGTGTAGAACCAAATACTGTTACTTTGGCTCCCGATGGCACTGTGGTGTCGACTGGCGAACATGTTTGCGATATATGCGGCAAAATGTTTGCCTTCCGCTATCAGTTAATTGTACATCGCCGTTATCACACCGAACGGAAGCCATTCAATTGTCAAGTTTGCGGCCAAGGTTTTTTTACTTCTCAAGATCTAACTcgccatggaaagatacacattGGTGGTCCCATGTTCACGTGCTTAGTATGCTTTAATGTTTTTGCCAACAATGCCTCTCTGGAGCGTCACATGAAACGCCATTCAACGGATAAACCCTTTGCTTGTACTATTTGTCAGAAAACATTTGCTCGCAAAGAACATTTGGAAAATCATTTTCGTTCACACACTGGTGAGACACCATTCCGGTGTCAATATTGTGCTAAAACTTTTACACGCAAAGAACACATGGTAAATCATGTGCGTAAACATACGGGCGAGACACCACATCGTTGCGAAATTTGCAAGAAATCATTTACGCGCAAAGAACACTATGTCAATCACTATATGTGGCACACTGGTCAAACTCCACATCAATGTGAAGTATGTGGTAAAAAGTATACACGCAAAGAACATTTAGCAAATCATATGCGTTCTCATACAAATGACACACCATTTCGTTGTGAAATTTGTGGGAAAAGTTTTAGTCGTAAAGAGCATTTTACTAATCATATATTATGGCACACAGGTGAAACTCCTCATCGTTGTGATTTCTGTTCGAAAACGTTTACCCGTAAGGAACATTTATTGAATCATGTACGTCAGCATACTGGCGAATCGCCGCATCGTTGTACATATTGTATGAAAACTTTTACGCGCAAAGAACATTTGGTAAATCACATACGACAACATACTGGTGAAACACCATTTAAGTGCACTTATTGCACCAAAGCCTTCACGCGTAAAGATCACATGGTTAATCATGTGCGTCAGCACACTGGTGAATCACCACACAAGTGTACATTCTGTACAAAAACGTTCACGCGCAAAGAACATTTAACGAATCATGTGCGTCAACATACTGGTGAATCACCGCATCGTTGCAGTTACTGCAAAAAGACCTTTACACGCAAGGAGCACCTTACGAATCACATACGTTTGCATACTGGTGATTCGCCGCACAAGTGTGAATATTGTCAAAAAACTTTCACACGCAAAGAACATCTCAATAATCATATGCGCCAACATTCAAGTGATAATCCACATTGTTGTAATGTCTGCAATAAACCATTTACACGTAAAGAACATTTAATAAATCACATGTCGCGCTGTCACACTGGTGATCGGCCATTTGCATGTGAAACTTGTGGAAAATCATTTCCTCTTAAGGGTAATTTACTCTTCCACCAACGTAGTCATACCAAGGGTCAAGAAATGGAAAGACCATTTTCGTGTGAGAAATGTccgaaaacatttatttgtaaAGgaCATTTGGTTTCTCACATGCGTTCTCATTCTGGCGAGAAACCACATGCCTGTACTTTGTGTAGTAAGGCATTTGTGGAAAGAGGTAATTTGAAGCGTCACATGAAAATGAATCACCCAAATGCTCCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCCCAAATTAAACAAGAGATAAAACCAGTTATCAGTGAAATAGATCCTCTACAAATAACAGCTCCAACAATGCATACCATACAACAAATAACAGCGGGAGGAACAGCAAATACAGTGCAACTAACGACGGGCTTGACACCTTTAGTTACATCAACAATAACATCGCACACTGCACAGAAGCAGGCGACACAACCTCAAGCACAAGTACAGCAAAATCAGTTGCAACAACAGCAAGTGGTAACATcacaccaacaacaacagcaggTGACAGCTCATCAACAAGCTttacagcagcaacaacaacagcatcaacaaaatcaattattGCAGTTGTCATTACAACAGGCAGCTGCTGCTGCAGCAGCTCATCAGCAAattcaacaacagcaacagcagcaacaacaacaacaacagcagcagcatcaAGAGCAACAACGtcaacatcatcatcaacaacagcagcaacaccAGACTCAACAGCAAGCTCATCATCAGCAACAAACAGCTACAACTGTCGTTGCAAGTGCTcatcaacaacagcagcagcaacagcaacaacaacaacaacaacagccatCTCAACAACAAACGCAAACTCAACAGCAACCACCACCAGTGCCAATCGCTTTAATACAATCCGATCAGGAAGCTTTGGCCCGTGCCACCATGCAACAATTACAACATATGCCCCCTAATGTTGAACAACATCCCGTTGTTTACTAA
Protein Sequence: MNIDNAIANVTTPGEPSTAATLSNSTTTTVSAVTTSNGYDSQQQNRHSPLQQQQQQQQQTHLNESRNILTVVQPPNQASQQYMSTQNIISIQNAGGGGARSGIGHLSPSPISLTATTAPSSIVVEHKHVVTHQPTITSTNSATTQPTTGGVASSSVAVPMNTTLVSAHESHLLHHHQHHVHHHVNQAAGTPLLLSSSGHSTPTSTTGTLLANNPQNLGKYWVVTNLFQGGPGQAAQYNEGGVSHSQTSLAEVPSSTLVRAISTTAGSTTVVTKTEAVSSSAGTLQIPQAQMLSQAGITQQLPNGTIITTQAQQQQPQQQRHVTEHQQQQQQQQLHVHEDNHQQQQQQQQQMNQQQHVAVLQTSDTIKEEKPFISNGKITTTNQQIIMQHISTAATSGSPANSGATTITLGTPKTEIKDDGSVVMSGKLQPGIEMYKVNIEDISQLFTYHEVFGKLHGDVMNHPLAAAHAALPAAANSNIASVVTASTTSANDVNNSSGATVVTNSVPITESTSTSSVGTGVVATTSTASNLTAIATNSNTVATVTSTAAGVPPAGLLMPKMEGGITSVEPNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVISEIDPLQITAPTMHTIQQITAGGTANTVQLTTGLTPLVTSTITSHTAQKQATQPQAQVQQNQLQQQQVVTSHQQQQQVTAHQQALQQQQQQHQQNQLLQLSLQQAAAAAAAHQQIQQQQQQQQQQQQQQHQEQQRQHHHQQQQQHQTQQQAHHQQQTATTVVASAHQQQQQQQQQQQQQQPSQQQTQTQQQPPPVPIALIQSDQEALARATMQQLQHMPPNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236968;
90% Identity: iTF_01236968;
80% Identity: -