Pobe016153.1
Basic Information
- Insect
- Phasia obesa
- Gene Symbol
- -
- Assembly
- GCA_949628195.1
- Location
- OX451216.1:50081946-50099956[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.8e-06 0.0013 20.6 1.3 1 23 575 597 575 597 0.97 2 18 0.00017 0.026 16.6 0.5 1 23 603 625 603 625 0.97 3 18 7.5e-05 0.011 17.7 0.6 1 23 631 653 631 653 0.98 4 18 5.6e-06 0.00085 21.2 3.0 1 23 659 681 659 681 0.97 5 18 7.5e-05 0.011 17.7 4.7 1 23 687 709 687 709 0.99 6 18 0.00013 0.02 16.9 5.6 1 23 715 737 715 737 0.97 7 18 6.4e-07 9.8e-05 24.2 4.3 1 23 743 765 743 765 0.98 8 18 2.4e-07 3.6e-05 25.5 2.4 1 23 771 793 771 793 0.97 9 18 0.00014 0.021 16.8 6.7 1 23 799 821 799 821 0.97 10 18 0.00023 0.035 16.1 6.6 1 23 827 849 827 849 0.98 11 18 2.2e-05 0.0033 19.4 4.5 1 23 855 877 855 877 0.98 12 18 8.1e-05 0.012 17.6 8.3 1 23 883 905 883 905 0.98 13 18 4e-06 0.00061 21.7 7.7 1 23 911 933 911 933 0.98 14 18 1.4e-06 0.00022 23.1 7.7 1 23 939 961 939 961 0.98 15 18 0.00045 0.068 15.2 9.5 1 23 967 990 967 990 0.95 16 18 0.00038 0.057 15.5 0.5 1 23 996 1018 996 1018 0.97 17 18 0.00039 0.059 15.4 4.7 1 23 1028 1050 1028 1050 0.98 18 18 2e-05 0.003 19.5 1.6 1 23 1056 1079 1056 1079 0.96
Sequence Information
- Coding Sequence
- atgaatactGATAATGTAATTACAAATGCAACAACTCCTGGTGagtcaacaacagcagcaacattatcaaatacaactacaacaacTGTTTCAGCAGTTACCACATCAAATGGCTACGATCCGCAGCAACAAAATCGTAATTCGcctttacaacaacaacaacatcagcagcagcaacaaactCAATTAAATGAgTCGCGTGATAATTTAACTATTGTTCAACCACTACATCAAACATCCCTACAATACATGTCGACGCCAAACGTAAGTAGTAACCAAAGTGCTGGTGGTGATCCTGGTATTAACCATATAACATCACCGCCGATTCCTTTAACAATATCCCCCACGACAACAACCTCGCCAGCAATTGCTGTTGAACATAAACATGTTATAATGaatgaaacaacaacaacaacatcaataacAGGGGATGTTGGTTCTAGACCACTTGATGTTACCATGAGCACCACCTTAGTGTCTGCACATGATGATTCACATTTACTTAACCATCACCACCATCAGCATCATATACATCATCAAACTTCAAGTACGCCGATGCTTCTAAGTAATTCTGTCTCTACTACGTCAACGCCAACAACCGGAACACTTTTAACCAATAATTCACAAAATTTGGGTAAATATTGGGTCGTGACAAACTTGTTTCAAGGAGCGCCTGGTCAAACGGCTCAATATAACGAGGGTGGTGTTACGCACACCCAAACATCTATAGCAGGAGTGCCTTCATCGACATTAGTGCGAGCAATATCCACAACTGCGGGCAGCACAACAGTCGTACCAAAAACTGAGGTAGAGTCTAGCAGTGCGGGAACACTGCAAATACAACAAACCCAAATGTTATCTCAGGCGGGTATAGCACAACAATTGCCCAATGGCACCATTATAACAACACAGTcgcagcaacagcagcaacagcagcaaagACATGTGACAGAACATCAGaaccaacagcagcagcaacaacagttGCATGTGCATGccTTAAATACTGCAGAGGATAATCGtcagcagcaacagcaattaAGTCAACAGCAACATGTTGCTGTACTACAGTCCAGCACTGCTATAAAAGACGAAAAACCTTTCGCTTCAAATGGCAAAATGGAAACAACTGAGCAACAAATTATTATGCAGCATATGTCAACTGCAGCATCTTCTGGCAACCCGGTTACCTCCGGAGCTACTACAATTACACTTGGTACTCCTAAAACAGAAATCAAAGATGACGGTAGCGTAGTGATGAGCGGAAAACTACATCCTGGCATTGAAATGTATAAAGTTAATATCGAAGATATATCACAACTTTTTACCTATCATGAGGTGTTTGGTAAACTACACGGCGACGTTATGAACCATCCCTTAGCTGCAGCTCATGCATCGTTACCAGCAACTACTAATAGTAATATTGCAACAGCTGTTTCTACAGCCACAACCAGTGCGACTGACATAAATCATACAACTGAAGTTCCCGTAATTAACAATAGTGTTGCTATAACAGAATCCACCAGTACTAGTTCAGTTGGTGCAGGTGTTGTTGCTACAACCAGTACTGCTACAAATTCTACAGTAGCAACTGCTACTTCAACCTCTACTGGTTTAGCTCCCGGTGGCTTGTTAATGCCGAAAATGGAGGGTGGTATTACTACTGTAGAACAAAATACTGTTACTTTGGCACCCGATGGCACAGTAGTGTCGACTGGCGAACACGTGTGCGATATATGTGGAAAAATGTTTGCCTTTCGCTATCAATTAATCGTACATCGTCGTTATCACACTGAACGGAAACCTTTTAACTGTCAAGTTTGCGGTCAGGGTTTTTTTACTTCTCAGGATCTTACTCGGCATGGAAAGATTCATATTGGTGGTCCAATGTTTACCTGTTTAGTGTGTTTCAATGTGTTTGCCAACAATGCTTCCTTAGAGCGTCACATGAAACGTCATTCAACGGATAAACCTTTTGCCTGCACTATATGCCAGAAGACCTTTGCTCGAAAAGAACATTTGGAAAATCATTTTCGTTCACACACTGGTGAGACACCATTCCGGTGTCAATATTGTGCTAAAACATTTACACGCAAAGAGCACATGGTAAATCATGTCCGCAAACATACAGGAGAAACACCACATCGTTGCGAAATCTGCAAGAAATCATTTACGCGCAAAGAACACTATGTCAATCACTATATGTGGCATACGggtCAAACACCACATCAGTGTGAAGTATGTGGTAAAAAGTATACACGTAAGGAACATTTGGCAAATCATATGCGTTCGCACACAAATGATACACCATTTCGTTGTGAAATTTGTGGCAAAAGCTTTAGTCGTAAAGAGCATTTCACTAATCATATATTATGGCATACAGGTGAAACTCCTCATCGTTGTGATTTCTGTTCGAAAACGTTTACGCGCAAGGAACATTTATTGAATCATGTACGTCAACATACCGGCGAATCGCCGCACCGTTGCACATATTGTATGAAAACATTTACGCGCAAAGAACATTTGGTCAATCACATACGACAGCATACTGGCGAAACACCTTTTAAGTGCACTTACTGCACAAAAGCCTTCACCCGAAAAGATCACATGGTAAATCATGTACGCCAGCATACAGGAGAATCACCACATAAGTGTACATTCTGTACAAAAACGTTTACGCGCAAAGAACATTTAACGAATCATGTGCGCCAGCATACTGGGGAATCACCGCATCGTTGCAGCTACTGCAAGAAAACCTTTACACGTAAAGAGCATCTAACGAATCACATACGTTTGCATACAGGTGATTCGCCGCACAAGTGTGAATATTGTCAGAAAACATTCACCCGTAAAGAACATCTCAACAATCATATGCGTCAACATTCTAGTGATAATCCGCATTGTTGCAATGTCTGCAACAAACCATTTACGCGCAAAGAACATTTAATAAATCATATGTCCCGCTGCCACACCGGTGATCGGCCATTTGCATGTGAAACTTGTGGAAAATCTTTTCCTCTTAAGGGTAATTTACTCTTCCATCAACGTAGTCATACCAAGGGCCAAGAAATGGAAAGACCATTTACGTGTGAAAAATGTccgaaaacatttatttgtaaaGGTCATTTGGTTTCACATATGCGCTCTCACTCCGGCGAAAAGCCACACGCTTGTACTTTGTGTAGTAAGGCTTTTGTAGAAAGAGGAAATTTAAAACGTCACATGAAAATGAATCATCCAAACGCTCCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTACctcaaataaaacaagaaataaaaccaGTTATCTGTGAATTAAATTCGTTACAAACTACAGCTCCCACAATGCATACAATACAACAAATAACAGCAGATGCAGCAGCAAATACAGTGCAACTAACAACGGGCTTGACGCCGTTGGTTACATCAACTATAACATCGCATACCACACAGAAGCAGCCAACACAGCCTCAAGCTCAAGTACAGCAAAATCCATTGccgcaacagcaacaacaagttGTAACTgcacaccaacaacaacaacaggtgACAGCTCATCAACAAGTTttgcagcagcagcaacaacagcagcatcaACAAAATCAATTATTACAATTGTCTATACAACAGGCAGCTGCTGCTGCAGCCCATCAGCAAATACAACAGCAGCATCAAGACCAACAACGCCAACACCACcatcaacagcagcagcaaactCAACAACAAACACATCATCAACAACAAACAGCTTCAAATGTTACTGTCGTTGCTAGTGCtcatcaacagcaacaacagcaacaacagcagcaacagcagcaacaacaacagcaacaacagccaTCTCAACAACAAACACAACAGCAATCACCACAAGTGCCAATCGCTTTAATACAAACCGAACAGGAAGCTTTGGCCCGTGCAACAATGCAACAATTACAGCATATGCCCACTAATGTTGAACAACATCCCGTTGTTTATTaa
- Protein Sequence
- MNTDNVITNATTPGESTTAATLSNTTTTTVSAVTTSNGYDPQQQNRNSPLQQQQHQQQQQTQLNESRDNLTIVQPLHQTSLQYMSTPNVSSNQSAGGDPGINHITSPPIPLTISPTTTTSPAIAVEHKHVIMNETTTTTSITGDVGSRPLDVTMSTTLVSAHDDSHLLNHHHHQHHIHHQTSSTPMLLSNSVSTTSTPTTGTLLTNNSQNLGKYWVVTNLFQGAPGQTAQYNEGGVTHTQTSIAGVPSSTLVRAISTTAGSTTVVPKTEVESSSAGTLQIQQTQMLSQAGIAQQLPNGTIITTQSQQQQQQQQRHVTEHQNQQQQQQQLHVHALNTAEDNRQQQQQLSQQQHVAVLQSSTAIKDEKPFASNGKMETTEQQIIMQHMSTAASSGNPVTSGATTITLGTPKTEIKDDGSVVMSGKLHPGIEMYKVNIEDISQLFTYHEVFGKLHGDVMNHPLAAAHASLPATTNSNIATAVSTATTSATDINHTTEVPVINNSVAITESTSTSSVGAGVVATTSTATNSTVATATSTSTGLAPGGLLMPKMEGGITTVEQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCSYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFTCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVICELNSLQTTAPTMHTIQQITADAAANTVQLTTGLTPLVTSTITSHTTQKQPTQPQAQVQQNPLPQQQQQVVTAHQQQQQVTAHQQVLQQQQQQQHQQNQLLQLSIQQAAAAAAHQQIQQQHQDQQRQHHHQQQQQTQQQTHHQQQTASNVTVVASAHQQQQQQQQQQQQQQQQQQQPSQQQTQQQSPQVPIALIQTEQEALARATMQQLQHMPTNVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01236968;
- 90% Identity
- -
- 80% Identity
- -