Basic Information

Insect: Pollenia amentaria
Gene Symbol: -
Assembly: GCA_943735935.1
Location: CALSEV010000316.1:251586-258993[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.3e-06 0.00083 20.9 1.3 1 23 529 551 529 551 0.97

2 11 0.00014 0.016 16.9 0.5 1 23 557 579 557 579 0.97

3 11 6.3e-05 0.0071 18.0 0.6 1 23 585 607 585 607 0.98

4 11 4.7e-06 0.00053 21.5 3.0 1 23 613 635 613 635 0.97

5 11 6.2e-05 0.0071 18.0 4.7 1 23 641 663 641 663 0.99

6 11 0.00011 0.012 17.2 5.6 1 23 669 691 669 691 0.97

7 11 5.3e-07 6.1e-05 24.5 4.3 1 23 697 719 697 719 0.98

8 11 2e-07 2.3e-05 25.8 2.4 1 23 725 747 725 747 0.97

9 11 0.0017 0.19 13.5 5.4 1 21 753 773 753 781 0.92

10 11 0.00046 0.052 15.3 4.5 1 23 791 813 791 813 0.98

11 11 1.6e-05 0.0019 19.8 1.6 1 23 819 842 819 842 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.3e-06	0.00083	20.9	1.3	1	23	529	551	529	551	0.97
2	11	0.00014	0.016	16.9	0.5	1	23	557	579	557	579	0.97
3	11	6.3e-05	0.0071	18.0	0.6	1	23	585	607	585	607	0.98
4	11	4.7e-06	0.00053	21.5	3.0	1	23	613	635	613	635	0.97
5	11	6.2e-05	0.0071	18.0	4.7	1	23	641	663	641	663	0.99
6	11	0.00011	0.012	17.2	5.6	1	23	669	691	669	691	0.97
7	11	5.3e-07	6.1e-05	24.5	4.3	1	23	697	719	697	719	0.98
8	11	2e-07	2.3e-05	25.8	2.4	1	23	725	747	725	747	0.97
9	11	0.0017	0.19	13.5	5.4	1	21	753	773	753	781	0.92
10	11	0.00046	0.052	15.3	4.5	1	23	791	813	791	813	0.98
11	11	1.6e-05	0.0019	19.8	1.6	1	23	819	842	819	842	0.96

Sequence Information

Coding Sequence: ATGTTACAGTCGCGAAATATTTTAACTGTTGTTCAACCGTCAAATCAGACATCTCAACAATATATGTCGACGCCAAATATTATAAGTATTCAAAATGCTGGAGGTGGTGGCGCTGGTTCTGGTATTAGCCACTTATCGCCATCACCAATGTCGTTGACTGCAACGACAACACCTTCTTCTATTGTTGTTGACCACAAACATGTTATAACGCATCAACCGACTATAACATCTACAAATTCCGCAACGACACAACCAACAACTGGGGGTGTTGCTTCTAGTTTAGCTGCTGTACCCATGAGCACTACGTTAGTGTCTGCACATGAATCACATTTGCTGCATCACCATCAGCATCATGTGCATCATCATGTAAATCAAGCTGCTGGCACCCCGTTACTTCTAAGCAGTTCTGCTCATTCAACACCAACGTCTACAACAGGAACACTTTTAGCCAATAATCCACAAAATTTGGGTAAATATTGGGTTGTGACAAATTTGTTTCAAGGAGGGCCTGGTCAAGCGGCTCAATATAGCGAAGGAGGTGTTAGCCACAGCCAGACACCTTTAGCCGGAGTGCCTTCATCAACATTAGTGCGTGCTGTATCCACAACTGCAGGCAGCACAACAGTGGTAACAAAAACTGAGGCAATTTCTAGCAGTGCGGGAACACTGCAAATACCACAAACACAAATGTTATCTCAGgcgggaataacacaacaattgccaaatggcactattataacaacacagtcacagcaacaacaacagcagcagcaaagacatgtaacggaacatcagcaccaacaacagcagcaacagttgcaTGTACATGCCTTAAACAATGCAGAAGATAATCGTCAGCAGCAACAACAACAACAAATGAACCAACAGCAACATGTTGCTGTGCTGCAATCAGGTGATGCCATAAAAGAAGAAAAACCTTTTATTTCAAATGGCAAAATAACTGCAACAAATCAACAGATCATTATGCAGCATATATCAACTGCAGCAACTTCGGGCAGCCCTGCTAACTCGGGAGCTACTACAATTACTTTGGGTACTCCAAAAACGGAAATTAAAGACGACGGTAGTGTAGTGATGAGTGGAAAAATGCAACCTGGCATTGAAATGTATAAAGTAAATATTGAAGATATATCTCAACTGTTTACCTATCATGAGGTATTTGGTAAGCTGCATGGCGATGTTATGAATCATCCTTTGGCAGCAGCGCATGCCGCATTACCAGCTGCCGCTAATAATAATATAGCGGCAGTTGCTGCTGCATCCACTACTAGTGCGAATGACGTCAATAATACATCAGGCGTCACTGTAGTAACCAATAGTGTCCCTATAACAGAATCCACCAGTACGAGTTCGGTGGGTACTGGCGTAGTTGCTACCACTAGTTCAGCGTCCAACTTAACAGCCATAGCAACAAACTCCAATACAGTAGCTTCCGCTACTTCTACAACAGCTGGCGTAGCTCCTACAGGCTTACTAATGCCAAAAATGGAGGGAGGCATTACTAGTGTAGAACAAAATACTGTTACTTTGGCTCCCGATGGCACCGTGGTCTCGACTGGCGAACATGTTTGCGATATATGCGGTAAAATGTTTGCCTTCCGCTATCAATTAATCGTACATCGTCGTTATCACACCGAACGCAAGCCATTCAATTGCCAAGTTTGCGGCCAAGGTTTTTTTACTTCTCAAGATCTAACTCGCCATGGAAAGATACATATTGGTGGCCCCATGTTCACGTGTTTAGTATGTTTTAATGTTTTTGCCAACAATGCCTCTTTGGAGCGTCACATGAAACGCCATTCAACGgataaaccctttgcttgtacaatatgtcaaaaaacctttgctcgcaaagaacatttggaaaatcattttcgttcacacactggtgagacaccattccggtgtcaatattgtgctaaaacatttacacgcaaagaacacatggtaaatcatgtgcgtaaacatacgggtgagacaccacatcgttgcgaaatttgcaagaaatcatttacgcgcaaagaacactatgttaatcactatatgtggcacactggtcagactccacatcaatgtgaagtatgtggtaaaaagtatacacgcaaagaacatttagcaaatcatatgcgttcgcatacaaatgacacaccatttcgttgtgaaatttgtggcaaaagttttagtcgtaaagagcattttactaatcatatattatggcacacaggtgaaactcctcatcgttgtgatttctgttcgaaaacgtttacacgtaaggaacatttattaaatcatggtaatttaCTCTTCCACCAACGTAGTCATACGAAGGGTCAAGAAATGGAAAGACCATTTTCGTGTGAGAAATGTCCAAAAACATTTATTTGTAAAGGACATTTGGTTTCACATATGCGTTCTCATTCTGGCGAGAAACCACATGCCTGTACTTTGTGTAGTAAGGCATTTGTGGAACGAGGTAATTTAAAGCGTCACATGAAAATGAATCACCCAAATGCTCCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCCCAAATTAAACAAGAGATAAAACCAGTTATCAGTGAAATTGATCCTCTCCAAATAACAGCTCCAACAATGCATACCATACaacaaataacggcaggaggaacggcaaatacagtgcaactaacgacgggtttgacacctttagtttcatcaacaataacgtcgcacactgcacagaagcaggcgacacaacctcaagcacaagtacagcaaaatcagttgcaacaacagcaacagcaagtagtaacatcacaccaacaacagcagcaggtgacagctcatcaacaagctttacagcagcagcaacaacaacagcatcaacaaaaccaattattgcagttgtcattacaacaggcagctgctgcagctcatcagcaaattcagcagcaacagcagcagcaacaacaacaacaacaacagcatcaagagcaacaacgtcaacatcatcatcaacaacaacaacagcagcagcagcaacaagctcaacagcaagctcatcatcagcaacaaacagctacaaatgttactgtcgttgcaagtgctcatcaacaacaacaacaacaacaacagccatctcaacaacaaacgcaaactcagcagcaaccaccaccagtgccagtcgctttaataacaaccgatcaggaagctTTGGCCCGTGCCGCCATGCAACAATTACAACATATGCCGCCTAATGTTGAACAACATCCCGTTGTTTACTAA
Protein Sequence: MLQSRNILTVVQPSNQTSQQYMSTPNIISIQNAGGGGAGSGISHLSPSPMSLTATTTPSSIVVDHKHVITHQPTITSTNSATTQPTTGGVASSLAAVPMSTTLVSAHESHLLHHHQHHVHHHVNQAAGTPLLLSSSAHSTPTSTTGTLLANNPQNLGKYWVVTNLFQGGPGQAAQYSEGGVSHSQTPLAGVPSSTLVRAVSTTAGSTTVVTKTEAISSSAGTLQIPQTQMLSQAGITQQLPNGTIITTQSQQQQQQQQRHVTEHQHQQQQQQLHVHALNNAEDNRQQQQQQQMNQQQHVAVLQSGDAIKEEKPFISNGKITATNQQIIMQHISTAATSGSPANSGATTITLGTPKTEIKDDGSVVMSGKMQPGIEMYKVNIEDISQLFTYHEVFGKLHGDVMNHPLAAAHAALPAAANNNIAAVAAASTTSANDVNNTSGVTVVTNSVPITESTSTSSVGTGVVATTSSASNLTAIATNSNTVASATSTTAGVAPTGLLMPKMEGGITSVEQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPVISEIDPLQITAPTMHTIQQITAGGTANTVQLTTGLTPLVSSTITSHTAQKQATQPQAQVQQNQLQQQQQQVVTSHQQQQQVTAHQQALQQQQQQQHQQNQLLQLSLQQAAAAAHQQIQQQQQQQQQQQQQHQEQQRQHHHQQQQQQQQQQAQQQAHHQQQTATNVTVVASAHQQQQQQQQPSQQQTQTQQQPPPVPVALITTDQEALARAAMQQLQHMPPNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236968;
90% Identity: -
80% Identity: -