Ltes025765.2
Basic Information
- Insect
- Linnaemya tessellans
- Gene Symbol
- -
- Assembly
- GCA_951800035.1
- Location
- OX637533.1:91468367-91482809[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7.8e-06 0.0014 20.7 1.3 1 23 521 543 521 543 0.97 2 18 0.00015 0.028 16.6 0.5 1 23 549 571 549 571 0.97 3 18 6.7e-05 0.012 17.7 0.6 1 23 577 599 577 599 0.98 4 18 5e-06 0.00092 21.3 3.0 1 23 605 627 605 627 0.97 5 18 6.6e-05 0.012 17.8 4.7 1 23 633 655 633 655 0.99 6 18 0.00012 0.021 17.0 5.6 1 23 661 683 661 683 0.97 7 18 5.7e-07 0.00011 24.3 4.3 1 23 689 711 689 711 0.98 8 18 2.1e-07 3.9e-05 25.6 2.4 1 23 717 739 717 739 0.97 9 18 0.00012 0.023 16.9 6.7 1 23 745 767 745 767 0.97 10 18 0.00021 0.038 16.2 6.6 1 23 773 795 773 795 0.98 11 18 1.9e-05 0.0036 19.4 4.5 1 23 801 823 801 823 0.98 12 18 7.2e-05 0.013 17.6 8.3 1 23 829 851 829 851 0.98 13 18 3.4e-06 0.00063 21.8 7.9 1 23 857 879 857 879 0.98 14 18 1.3e-06 0.00024 23.2 7.7 1 23 885 907 885 907 0.98 15 18 0.0004 0.074 15.3 9.5 1 23 913 936 913 936 0.95 16 18 0.00033 0.062 15.5 0.5 1 23 942 964 942 964 0.97 17 18 0.00048 0.09 15.0 4.5 1 23 974 996 974 996 0.98 18 18 1.8e-05 0.0033 19.6 1.6 1 23 1002 1025 1002 1025 0.96
Sequence Information
- Coding Sequence
- ATGTTGCAGTCGCGTGATATTTTGACTGTTGTCCAACTACCATATCAAACACCACAACAATATGTACCAACGTCAAATGTAAGTAGTTCAGGTGATGGTGCAGGTGTTAATCACATAACACCATCCCATTTAGCACCATCACCAAAGACGGCGACAACAATGCCATCTACTATTGGTGTTGatcataaaaatgttataatacaaCAGCCAGCTATAACTTCAACGAATTTTACAACGTCAATACCGACCACTCGGGATGTTAGTTCTATTCCAGTAGACGTATCAATGAGTACCAGATTAGTGTCTGCACACGATCCACATTTGCTGAATCACCACCACTATCAGCAACATGTACATCATCATGCAAACCATGCTTCAGGTGCGCCTTTGCTGCTAAGTAGCTCTGACCCTTCAACTCCAACAATACCCACAGGAACACTTTTAGCCAATAGCCCACAAAATtTGGGTAAATATTGGGTCGTGACAAACTTGTTTCAAGGATCGCCTGGTCAGGCGACTCAGTATACCGAGGGCGGGTTAAACCATACCCAAACGTCTATAGCAGGAGTGCCTTCATCGACATTAGTGCGTGCTATATCCACAACTGCAGGCAGCACATCAGTGGTTACCAAAACTGAAGGAGTTTCTAGCAGCGCGGGAACGCTGCAAACACCACGAACTCAAATGCTATCGCAAGCAGGTATAACGCAACAATTGCCAAACGGCACCATTATAACAACACAatcacagcaacaacagcatgGTCATGTTACTGAACATCAACAACATCAGCAGCAGcaccagcagcaacagcagttGCATGTGCATGCCTTAAATAATGCAGAAGATAGTCATCAGCAACAATTAAGCCAGCAGCAGCATGTTGCTGTACTACAGTCGGCCATAAAAGATGAAAAGCCATTTGACACCAATGGCAAAATAAGCACTACAAATCAACAGATTATTATGCAACATATATCGACGTCTGCATCTTCTGGTAATCCGTCTACCTCGGGAGCTACTACTATCACACTGGGTACTCCTAAAACGGAAATTAAAGACGATGCTAGCGCAGTCATGAGTGGAAAACTACATCCCGGTATTGAAATGTATAAAGTCAATATCGAAGATATATCGCAATTGTTTACTTATCACGAAGTTTTCGGTAAATTACACGGCGATGGCATAAATCATCCATTGGCCGGAGCACCGCATGCATCCTTAGCATCAACTGCAAACGGTAATATTGCTACTGCTGTTTCGGCCACTGCCACCAGTGCGACTGATGCGAACAACACAACTGGAGTCCCTGTGGTAGCAAATAGCGTCGTTATAACAGAATCAACTAGTACCAGTTCCGTTGTTGCTACAACCAGTGCAGCAGCAAATTTAACAACTGCTATTGCTTCAAATTCTAATGCTGTAGTAACCGCTACTTCCACAACGTCAGGAGTGGTTCCTGGTGGCTTGTTAATGCCAAAAATGGAAGGCGGTATCAGTAGTGTTGACCAAAATACTGTTACATTGGCACCAGACGGTACCGTAGTTTCAACTGGTGAACATGTGTGCGATATATGCGGAAAAATGTTTGCCTTTCGCTATCAATTGATAGTACATCGTCGATACCATACAGAGCGAAAACCATTTAATTGTCAAGTTTGTGGGCAGGGGTTTTTCACTTCTCAGGATCTTACACGTCATGGAAAGATTCATATTGGTGGGCCCATGTTTACCTGTTTAGtgtgttttaatgtttttgccaACAACGCTTCTTTGGAGCGTCACATGAAACGACATTCAACGGATAAGCCATTTGCTTGCACAATATGTCAAAAGACGTTTGCGCGCAAAGAACACTTGGAAAATCATTTTCGTTCGCACACTGGCGAAACTCCTTTCCGTTGTCAGTATTGTGCCAAAACATTCACTCGCAAAGAGCACATGGTGAATCACGTGCGTAAGCATACAGGAGAGACACCACATCGTTGCGAAATCTGCAAGAAATCATTTACGCGCAAAGAACATTATGTCAATCACTATATGTGGCATACTGGTCAAACACCACATCAATGTGAAGTGTGTGGTAAAAAGTATACACGCAAGGAACATTTAGCAAATCATATGCGTTCGCACACAAATGATACACCCTTCCGTTGTGAAATTTGTGGCAAAAGCTTTAGTCGTAAGGAGCATTTTACTAATCATATATTATGGCATACAgGTGAAACTCCACATCGTTGTGATTTCTGTTCGAAAACGTTTACTCGCAAGGAACATTTATTGAATCATGTACGTCAACATACTGGGGAATCGCCACATCGTTGTACATATTGTATGAAGACGTTTACGCGGAAAGAACATTTGGTCAATCATATACGGCAGCATACTGGTGAGACACCATTCAAGTGCACTTACTGCACCAAGGCCTTCACCCGAAAAGATCACATGGTCAATCATGTACGCCAACATACAGGGGAATCTCCACATAAATGTACATTCTGTACGAAGACGTTTACGCGCAAAGAACATTTAACTAATCACGTGCGTCAACACACTGGTGAATCACCGCACCGCTGCACCTATTGTAAGAAAACTTTTACACGCAAGGAGCATCTAACGAATCATATACGTTTGCATACTGGCGATTCACCGCACAAGTGTGAATACTGTCAAAAAACATTCACCCGTAAGGAACATCTCAACAATCATATGCGTCAACATTCTAGTGATAATCCACATTGTTGCAATGTCTGTAACAAACCATTTACTCGTAAAGAACATTTAATAAATCACATGTCCCGCTGCCATACTGGTGATCGGCCATTTGCATGTGAAACTTGTGGAAAATCCTTTCCACTTAAGGGAAATTTACTCTTCCATCAGCGTAGTCATACTAAGGGCCAAGAAATGGAAAGGCCATTTTCGTGCGAAAAATgcccaaaaacttttatttgtaaaggaCATTTGGTTTCACATATGCGCTCCCACTCTGGCGAGAAACCACACGCTTGCACTTTATGCAGTAAAGCGTTTGTGGAACGAGGCAATTTAAAACGCCACATGAAAATGAATCATCCAAATGCACCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCTCAaattaaacaagaaataaaaccaGCTATCAGTGAATTAAaTTCGCTTCAAAGTACAGCCCCAACAATGCATACTATACAACAAATAACGGCTGGAGCATCAGCAAATACTGTGCAACTAACAACGGGCTTAACGCCATTAGTAACGTCAACTATTACGTCACATACTGCACAGAAGCAAGCAACACAGCCTCAAGCTCACGTGCAGCAAAGTGCattgcagcaacagcagcaacaagtAGTGGCTACacaccagcaacaacagcaacagcaggtAACATCGCATCAACAAGTcttgcagcagcagcaacaacatcaacagcaaCACCAGCAAAATCAGCTATTGCAATTATCTATACAACAGGCGGCGGCCGTAGCCCATCAGCAAatacagcagcaacagcaacaacatcagGATCAACAATGTCAACATCATCATCAAccgcaacaacagcagcagcagcagacaCAACAGCAACCTCATCATCAACAGCAAACAGCTCCAAATGTTACTGTCGTTACTAGTGctcatcagcagcagcagcaacaacagtcATCTCAACAACAAACGCAAACTCAACAGCAACCACCACAAGTGCCAATAGCTTTAATACAACCCGATCAGGAAGCCTTGGCCCGTGCAGCGATGCAATTACAGCACATGTCCGCCAATGTTGAGCAACATCCAGTTGTATACTAA
- Protein Sequence
- MLQSRDILTVVQLPYQTPQQYVPTSNVSSSGDGAGVNHITPSHLAPSPKTATTMPSTIGVDHKNVIIQQPAITSTNFTTSIPTTRDVSSIPVDVSMSTRLVSAHDPHLLNHHHYQQHVHHHANHASGAPLLLSSSDPSTPTIPTGTLLANSPQNLGKYWVVTNLFQGSPGQATQYTEGGLNHTQTSIAGVPSSTLVRAISTTAGSTSVVTKTEGVSSSAGTLQTPRTQMLSQAGITQQLPNGTIITTQSQQQQHGHVTEHQQHQQQHQQQQQLHVHALNNAEDSHQQQLSQQQHVAVLQSAIKDEKPFDTNGKISTTNQQIIMQHISTSASSGNPSTSGATTITLGTPKTEIKDDASAVMSGKLHPGIEMYKVNIEDISQLFTYHEVFGKLHGDGINHPLAGAPHASLASTANGNIATAVSATATSATDANNTTGVPVVANSVVITESTSTSSVVATTSAAANLTTAIASNSNAVVTATSTTSGVVPGGLLMPKMEGGISSVDQNTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEIKPAISELNSLQSTAPTMHTIQQITAGASANTVQLTTGLTPLVTSTITSHTAQKQATQPQAHVQQSALQQQQQQVVATHQQQQQQQVTSHQQVLQQQQQHQQQHQQNQLLQLSIQQAAAVAHQQIQQQQQQHQDQQCQHHHQPQQQQQQQTQQQPHHQQQTAPNVTVVTSAHQQQQQQQSSQQQTQTQQQPPQVPIALIQPDQEALARAAMQLQHMSANVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01236968;
- 90% Identity
- -
- 80% Identity
- -