Pmne046152.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius mnemosyne
Gene Symbol
-
Assembly
GCA_963668995.1
Location
CAVLGL010000093.1:43716937-43764893[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.7e-05 0.02 17.2 2.2 1 23 431 453 431 453 0.97
2 20 0.006 1.3 11.6 0.5 1 20 459 478 459 481 0.94
3 20 2.5e-05 0.0054 19.0 5.6 1 23 500 522 500 522 0.98
4 20 0.00023 0.048 16.1 4.7 1 23 528 550 528 550 0.99
5 20 4.5e-05 0.0095 18.3 5.3 1 23 556 578 556 578 0.97
6 20 1.4e-05 0.0029 19.9 7.3 1 23 584 606 584 606 0.97
7 20 1.2e-06 0.00025 23.3 2.7 1 23 612 634 612 634 0.97
8 20 0.00012 0.026 16.9 6.7 1 23 640 662 640 662 0.97
9 20 0.00018 0.037 16.4 6.5 1 23 668 690 668 690 0.97
10 20 5.9e-07 0.00012 24.2 1.9 1 23 696 718 696 718 0.98
11 20 1.6e-05 0.0034 19.7 6.3 1 23 724 746 724 746 0.96
12 20 9.6e-06 0.002 20.4 6.6 1 23 752 774 752 774 0.98
13 20 7.5e-06 0.0016 20.7 6.3 1 23 780 802 780 802 0.98
14 20 1.9e-05 0.0041 19.4 6.6 1 23 808 830 808 830 0.97
15 20 1.2e-05 0.0024 20.1 6.4 1 23 836 858 836 858 0.97
16 20 1.5e-05 0.0031 19.8 5.8 1 23 864 886 864 886 0.98
17 20 1.7e-05 0.0036 19.6 7.2 1 23 892 914 892 914 0.97
18 20 1e-05 0.0021 20.3 4.5 1 23 920 942 920 942 0.97
19 20 0.00066 0.14 14.6 0.3 1 23 949 971 949 971 0.96
20 20 0.0028 0.58 12.6 5.0 1 23 980 1002 980 1002 0.99

Sequence Information

Coding Sequence
ATGAATCCCGAACACCATAACATCAATACAGGTGGCGGTCAACCTGGTAATTCAGAGGCACAAAATCAAAGGGTTTCATCTGCTCAACAACAACAACAGTCGACCAATAATTTGACTCCCACAACTTCTGCTACCGATTTGCGAGTTAACTCGGCTGCTGTAAATGTAGCTTTGTCAAGCGTCGCGAAATATTGGGTGTTCACAAATTTATTTCCCGGTCCTATACCTCAAGTTTCTGTATATGGCTTACCTACCAACACAAGAATTGAAAATGGAAAACCTGTGCAGgACCTTGGCCAAGCTCATGCAGGTCTTCTGAATGGTGATCCAAACCTTATACTTGGTCAACATGCAGGACAACCACAATTATCTGTATCTGGACCTGGTGGTCAACAAATACCTGTGACACAAATAATTGCAACACAGTTGCAATCTGGGCAGACTCATGAGTCACTGGTGGCTCACAATCAGCAACAAGATCTTACTTCTCAGCAAGGCTCAGGCAATGGATCACAGGTCTCGGTTAACAATGGCCAGCCCTCTCATCAGCAGGTACCCAATAATCGGGTCGAGTTTATACAACACCATAACATTGATATGGTAAATCATGTGGGGCATCATTCACAACAGCATTCATTGCAGCAACAACTTATGGCAGCCACTCGTCCAGAGCATGCAAATCAACAgATTCAGCTAACTGTAAGTGAAGATGGCATTGTAACTGTGGTAGAGCCCGGTGGAAGCAAGCTTGTTGATAAAGATGAACTACATGAAGCTATTAAAATGCCGACAGACCATACCTTGACAGTTCATCAGTTACAACAAATTGTTGGCCATCATCAGGTAATTGATAGTGTGGTTCGCATCGAGCAAGCAACTGGAGAACCAGCAAATATACTTGTTACACAGAATCCTGATGGAACAACTTCAATAGAAACAAGTGCTGCAGAACAGCTTATAGTGAAAGATGAGAAAAATGTAGGGAAAATTGAATCTGCCCAATTCGCAATACCTACAGATATAAAAGATATCAAGGGTATTGACCTAAAGAGTGTAGGGGCAATGGGCATGGAAGGTGCTGTGGTAAAGATCTCTGCAGGTGCCTCAGAACATGATCTTCATGCAATGTACAAAGTAAATGTGGAGGATCTTTCACAACTGCTGGCATACCATGAAGTATTCGGTAAATTGAATACCGAAAATCAACAGCAAGCCAAGGTTATAAGTGAAGTGGGAGTAGAGGCCGGTACTAGTGCTACCATATCAGAAACAGACTCCTCTCCTGGCCATCATTCCTGTGACATTTGtggaaaaatatttcaatttcgtTACCAACTTATTGTTCAcagACGATATCATGGTGAAAGTAAGCCCTACACATGTCAAGTATGTGGCTCTGCATTTGCTAATGCAGTTGAACTATCGCGTCATGGAAAATGTCACCTagCTGGAGACCCTGCTGAGAGACAAGCAAAAAAATTAACACAAGACAAACCCTACGCATGCACAACTTGCCACAAAACTTTCTCCCGAAAGGAGCATCTGGACAACCATGTTCGAAGTCACACTGGAGAGACACCTTATAGGTGTCAGTTTTGTGCAAAGACATTCACCCGTAAGGAGCATATGGTGAATCACGTTAGGAAGCATACTGGTGAAACCCCACATCGTTGTGACATCTGCAAGAAGAGCTTCACCAGGAAAGAACATTTTATGAATCATGTCATGTGGCACACAGGTGAAACGCCGCATCATTGTCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTCAACCATATGAGATCTCATACAAATGACACTCCGTTTCGATGTGAATTGTGCGGCAAGTCATTTACAAGAAAGGAACACTACACCAATCACATACTGTGGCATACGGGTGAAACACCGCACCGGTGCGACTTCTGTTCGAAGACGTTCACGCGCAAGGAGCACCTGCTGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGCTGCAGCTTCTGCTCCAAGTCCTTCACTCGCAGAGAGCATCTCGTCAACCACGTCAGGCAACACACTGGTGAAACGCCCTTCCAGTGCGGATACTGCCCTAAAGCGTTCACTCGAAAGGATCACTTGGtAAACCATGTTCGACAACACACTGGAGAATCACCTCACATATGTTCATATTGTACAAAGTCTTTCACGCGCAAGGAACACTTGACTAATCATGTCCGTCAGCACACCGGAGAGTCGCCGCATCGCTGCACCTATTGCGCTAAATCTTTCACAAGGAAAGAACATCTTACTAATCATATCAGACAGCACACGGGCGAAACTCCACACAAGTGCACGTACTGCTCGCGCGCCTTCTCGCGCAAGGAGCACCTCAACAACCACATCCGGCAGCACACCGGCGACACGCCGCACTCTTGCTCCTATTGCAACAAGACCTTCAAGCGCAAGGAGCACCTCGTCAACCATGTTCGACAACATACGGGTGAGACACCGTTCAAATGTACATATTGTACAAAGGCGTTCTCGCGGAAGGAACATCTGACGAATCACATTCACCTTCACACTGGAGAAACACCACACAAGTGCCCCTTCTGCACCAAAACATATTCCAGGAAGGAACATTTGACCAACCATGTCAGGATACATACGGGTGAATCGCCACATCGCTGTGAATTCTGTGATAAGACATTCACAAGGAAGGAACACCTTACCAACCATTTAAAGCAGCACACTGGAGAGACTCCGTTTCACTGCAAAGTCTGCTCCAAACCTTTCACAAGGAAGGAACACCTTGTAACGCATATGAGGGCCCATAGTTGCGGGGAACGACCTTACAGTTGTGGAGAATGTGGCAAATCATTTCCATTGAAAGGAAACTTGTTATTCCACGAACGATCACATCAGAAAGGTGGCAGTGGAAGCAAATTTAGGTGTGAAGTTTGTTCAAAGCACTTCATTTGTAAAGggaATTTAGTATCACATCAACGCACCCATACGGCGGCAGGCGAAACTGTACCGAACAGTGAACAAGTCACAGAAGGCGAGCAATGCGGTGATTGCGATAAAGAGACCACTGAGCAGCCTGAACGTAAACATGATATCAGAACTACAAACGAAAACACTGAAGAAGATATCACACAAAACCAACAAAATAACACTGTTATGCAAATAACTAGTCAGGATACATTACCAAATGATGTAATGAAAAATCTAGGACTAGGAGCAGGTATCCTCGAAAAACTATGTCGCACAGTTAACGATAGCTGTGTTTTGTACACAGATATATTTTTTACAAGTCTGAAGCTGGCAGAACTTTTGCTAGTAAAAGTTAACCCAATTTTTCTAACTGGAACTGCAGTCTCAAATAGTATTGGACCAGTAGCGAAGAAACTGAAGAACGACAAGACGTTAGAAAAAGGACAGTGGGATGAAAAAGTAAGAGACGATGAAAATGTGTGTGTCGTAAAATGGATGGACCAAAAGGCCGTAACAATGTTGTCTACATGTTCAGGGAGCGCTCCTGCAGATACCTGCAAACGGTGGTACAAAAAAGAAAAGCGGAAGATAGATGTAGCCCGGCCAGAAGCAGTCAGAAGTTACAACACCTGCATGGGTGGAATAGATTTGTGCGACAGACTAATTGCATACTATCGAAGTGCTATGCGAACAAGAAAGTGGACAGTACGAATTTATTGCCATTTTCTGGATTTGGCTGTAGTCAATTGCTGGATAATGGTACACCCGCTGTTGCACCTAGGAAAATATCCAACGCAAAAACAAGTTGGGCTTACTTCAATACTGACTGAATCTAGCCAAAGCGATGACGAAGTATAG
Protein Sequence
MNPEHHNINTGGGQPGNSEAQNQRVSSAQQQQQSTNNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTNTRIENGKPVQDLGQAHAGLLNGDPNLILGQHAGQPQLSVSGPGGQQIPVTQIIATQLQSGQTHESLVAHNQQQDLTSQQGSGNGSQVSVNNGQPSHQQVPNNRVEFIQHHNIDMVNHVGHHSQQHSLQQQLMAATRPEHANQQIQLTVSEDGIVTVVEPGGSKLVDKDELHEAIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAAEQLIVKDEKNVGKIESAQFAIPTDIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNTENQQQAKVISEVGVEAGTSATISETDSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFANAVELSRHGKCHLAGDPAERQAKKLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHICSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCSRAFSRKEHLNNHIRQHTGDTPHSCSYCNKTFKRKEHLVNHVRQHTGETPFKCTYCTKAFSRKEHLTNHIHLHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCEFCDKTFTRKEHLTNHLKQHTGETPFHCKVCSKPFTRKEHLVTHMRAHSCGERPYSCGECGKSFPLKGNLLFHERSHQKGGSGSKFRCEVCSKHFICKGNLVSHQRTHTAAGETVPNSEQVTEGEQCGDCDKETTEQPERKHDIRTTNENTEEDITQNQQNNTVMQITSQDTLPNDVMKNLGLGAGILEKLCRTVNDSCVLYTDIFFTSLKLAELLLVKVNPIFLTGTAVSNSIGPVAKKLKNDKTLEKGQWDEKVRDDENVCVVKWMDQKAVTMLSTCSGSAPADTCKRWYKKEKRKIDVARPEAVRSYNTCMGGIDLCDRLIAYYRSAMRTRKWTVRIYCHFLDLAVVNCWIMVHPLLHLGKYPTQKQVGLTSILTESSQSDDEV