Pgla011442.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius glacialis
Gene Symbol
-
Assembly
GCA_033319125.1
Location
JAVANC010000005.1:20967498-21010440[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 7.1e-05 0.016 17.4 2.2 1 23 433 455 433 455 0.97
2 21 0.0043 0.99 11.8 0.5 1 20 461 480 461 483 0.94
3 21 1.9e-05 0.0042 19.3 5.6 1 23 502 524 502 524 0.98
4 21 0.00017 0.038 16.3 4.7 1 23 530 552 530 552 0.99
5 21 3.3e-05 0.0075 18.5 5.3 1 23 558 580 558 580 0.97
6 21 1e-05 0.0023 20.1 7.3 1 23 586 608 586 608 0.97
7 21 8.5e-07 0.00019 23.5 2.7 1 23 614 636 614 636 0.97
8 21 9e-05 0.021 17.1 6.7 1 23 642 664 642 664 0.97
9 21 0.00013 0.029 16.6 6.5 1 23 670 692 670 692 0.97
10 21 4.3e-07 9.8e-05 24.4 1.9 1 23 698 720 698 720 0.98
11 21 1.2e-05 0.0027 19.9 6.3 1 23 726 748 726 748 0.96
12 21 7e-06 0.0016 20.6 6.6 1 23 754 776 754 776 0.98
13 21 5.5e-06 0.0012 20.9 6.3 1 23 782 804 782 804 0.98
14 21 1.4e-05 0.0032 19.7 6.6 1 23 810 832 810 832 0.97
15 21 8.5e-06 0.0019 20.3 6.4 1 23 838 860 838 860 0.97
16 21 1e-05 0.0023 20.1 5.8 1 23 866 888 866 888 0.98
17 21 1.2e-05 0.0028 19.8 7.2 1 23 894 916 894 916 0.97
18 21 7.3e-06 0.0017 20.5 4.5 1 23 922 944 922 944 0.97
19 21 0.00048 0.11 14.8 0.3 1 23 951 973 951 973 0.96
20 21 0.002 0.46 12.9 5.0 1 23 982 1004 982 1004 0.99
21 21 9 2.1e+03 1.4 0.3 2 11 1022 1031 1022 1037 0.84

Sequence Information

Coding Sequence
ATGAATCCCGAACACCATAACATCAATACGGGTGGCGGTCAACCTCCTGGTAATTCAGAGGCACAAAATCAAAGGGTTTCATCTgctcaacaacaacaacaacagtcCACCAATAATTTGACTCCCACAACTTCTGCTACCGATTTGCGAGTTAACTCTGCTGCTGTAAATGTAGCTTTGTCAAGTGTCGCGAAATATTGGGTGTTCACAAATTTATTTCCGGGTCCTATACCTCAAGTTTCTGTATATGGCTTACCTACCAACACAAGAATTGAAAATGGAAAACCTGTGCAGgACCTTGGCCAAGCTCATGCAGGTCTTCTGAATGGTGATCCAAACCTTATACTTGGTCAGCATGCAGGACAACCACAATTATCTGTATCCGGACCTGGTGGTCAACAAATACCTGTGACACAAATAATTGCAACACAGTTGCAATCTGGGCAGACTCATGAGTCGCTGGTGGCTCACAATCAGCAACAAGATCTTACTTCTCAGCAAGGCTCAGGCAATGGATCACAGGTCTCGGTTAACAATGGCCAGCCCTCTCATCAGCAGGTACCCAATAATCGGGTCGAGTTTATACAACACCATAACATTGATATGGTAAATCATGTGGGACATCATTCACAACAGCATTCATTGCAGCAACAACTTATGGCAGCCACTCGTCCAGAGCATGCAAATCAACAGATTCAGCTAACTGTAAGTGAAGATGGCATTGTAACTGTGGTAGAGCCCGGTGGAAGCAAGCTTGTTGATAAGGATGAACTACATGAAGCTATCAAAATGCCCACAGACCATACCTTGACAGTGCATCAGTTACAACAAATTGTTGGCCATCATCAGGTAATTGATAGTGTGGTTCGCATCGAGCAAGCAACTGGAGAACCAGCAAATATACTTGTTACACAGAATCCTGATGGAACAACTTCAATAGAAACTAGTGCCGCAGAGCAGCTTATAGTTAAAGATGAGAAAAATGTAGGGAAAATTGAATCTGCCCAATTTGCAATACCTACAGATATAAAAGATATCAAGGGTATTGACCTAAAGAGTGTAGGGGCAATGGGTATGGAAGGTGCTGTGGTAAAGATCTCTGCAGGTGCCTCAGAACATGATCTTCATGCAATGTACAAAGTAAATGTGGAGGATCTTTCACAGCTGCTGGCATACCATGAAGTTTTCGGTAAATTGAATACCGAAAATCAACAGCAAGCCAAGGTTATAAGTGAAGTGGGAGTAGAGGCCGGTACTAGTGCCACCATATCAGAAACAGACTCCTCTCCTGGTCATCATTCCTGTGACATTTGTGGGAAAATATTTCAATTTCGTTACCAACTTATTGTTCACagACGATATCATGGTGAGAGTAAGCCCTACACATGTCAAGTATGTGGCTCTGCGTTTGCTAATGCAGTTGAACTATCGCGTCATGGAAAATGTCACCTagCTGGAGACCCTGCTGAGAGACAAGCAAAAAAATTAACACAAGACAAACCCTACGCATGCACAACTTGCCACAAAACTTTCTCCCGAAAGGAGCATCTGGACAACCATGTTCGAAGTCACACTGGAGAAACACCTTATAGATGTCAGTTTTGTGCGAAGACATTCACCCGTAAGGAGCATATGGTGAATCACGTTAGGAAGCATACTGGTGAAACCCCACATCGTTGTGACATCTGCAAGAAGAGCTTCACAAGGAAGGAACATTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCATCATTGTCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTCAACCATATGAGATCTCATACAAATGACACTCCGTTTCGATGTGAATTGTGCGGCAAGTCATTTACAAGAAAGGAACACTACACCAATCACATACTGTGGCATACGGGTGAAACACCGCACCGGTGCGACTTCTGTTCGAAGACGTTCACGCGCAAGGAGCACCTGCTGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGCTGCAGCTTCTGCTCCAAGTCTTTCACTCGCAGAGAGCATCTCGTCAACCACGTCAGGCAACACACTGGCGAAACGCCCTTCCAGTGCGGATACTGCCCTAAAGCGTTCACTCGAAAGGATCATTTGGtAAACCATGTTCGACAACACACTGGAGAATCACCTCACATATGTTCATATTGTACAAAGTCTTTCACGCGCAAGGAACACTTGACTAATCATGTCCGTCAGCACACTGGAGAGTCGCCGCATCGCTGTACCTATTGCGCTAAATCTTTCACAAGGAAAGAACATCTTACTAACCATATCAGACAGCACACGGGCGAAACTCCACACAAGTGCACGTACTGCTCGCGCGCCTTCTCGCGCAAGGAGCACCTCAACAACCACATCCGGCAGCACACCGGCGACACGCCGCACTCTTGCTCCTATTGCAACAAGACCTTCAAGCGCAAGGAGCACCTCGTCAACCACGTCCGACAACATACGGGCGAAACTCCGTTCAAATGTACATATTGTACAAAGGCGTTCTCGCGGAAGGAACATCTGACGAATCACATTCACCTTCACACTGGAGAAACACCACACAAGTGCCCCTTCTGCACCAAAACATATTCCAGGAAAGAACATTTGACCAACCACGTCAgGGTACATACGGGTGAATCGCCACATCGCTGTGAATTCTGTGATAAGACATTCACAAGGAAGGAACACCTTACCAACCATTTAAAGCAGCACACTGGAGAGACTCCGTTTCATTGCAAAGTCTGCTCCAAACCTTTCACAAGGAAGGAACACCTTGTAACGCATATGAGGGCGCATAGTTGCGGGGAACGACCTTACAGTTGTGGAGAATGTGGCAAATCATTTCCGCTGAAAGGAAACTTGTTATTCCACGAACGATCACATCAGAAAGGTGGCAGTGGAAGCAAATTTAGGTGTGAAGTTTGTTCAAAGCACTTCATTTGTAAAGggaATTTAGTATCACATCAACGCACCCATACGGCGGCAGGCGAAACTGTACCAAACAGTGAACAAGTCACAGAAGGCGAGCAATGCGGTGATTGCGATAAAGAGACCACTGAACAGCCTGAACGTAAACATGATATCAGAACTACAAACGAAAACACTGAAGAAGACATCACACAAAACCAACAAAATAACACTGTTATGCAAATAACTAGTCAGCAAGTACGCGCTGGCTCGGCTACAGGCGGGTCCAATGTTACAACATTTACCCATACTTCGAGCACACAACACCACACCGGCAATGCAATATCTCATCATCCGGTCACTGTGAACTACTAG
Protein Sequence
MNPEHHNINTGGGQPPGNSEAQNQRVSSAQQQQQQSTNNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTNTRIENGKPVQDLGQAHAGLLNGDPNLILGQHAGQPQLSVSGPGGQQIPVTQIIATQLQSGQTHESLVAHNQQQDLTSQQGSGNGSQVSVNNGQPSHQQVPNNRVEFIQHHNIDMVNHVGHHSQQHSLQQQLMAATRPEHANQQIQLTVSEDGIVTVVEPGGSKLVDKDELHEAIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAAEQLIVKDEKNVGKIESAQFAIPTDIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNTENQQQAKVISEVGVEAGTSATISETDSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFANAVELSRHGKCHLAGDPAERQAKKLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHICSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCSRAFSRKEHLNNHIRQHTGDTPHSCSYCNKTFKRKEHLVNHVRQHTGETPFKCTYCTKAFSRKEHLTNHIHLHTGETPHKCPFCTKTYSRKEHLTNHVRVHTGESPHRCEFCDKTFTRKEHLTNHLKQHTGETPFHCKVCSKPFTRKEHLVTHMRAHSCGERPYSCGECGKSFPLKGNLLFHERSHQKGGSGSKFRCEVCSKHFICKGNLVSHQRTHTAAGETVPNSEQVTEGEQCGDCDKETTEQPERKHDIRTTNENTEEDITQNQQNNTVMQITSQQVRAGSATGGSNVTTFTHTSSTQHHTGNAISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01157022;
90% Identity
iTF_00204511;
80% Identity
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