Basic Information

Insect: Papilio memnon
Gene Symbol: -
Assembly: GCA_003118335.3
Location: JAOPJP010000002.1:2690276-2703845[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.4e-05 0.0055 17.4 2.2 1 23 428 450 428 450 0.97

2 20 0.00074 0.064 14.1 0.7 1 20 456 475 456 478 0.94

3 20 1.7e-05 0.0014 19.3 4.4 1 23 497 519 497 519 0.98

4 20 0.00015 0.013 16.3 4.7 1 23 525 547 525 547 0.99

5 20 2.9e-05 0.0025 18.5 5.3 1 23 553 575 553 575 0.97

6 20 0.00091 0.078 13.8 10.1 1 23 581 603 581 603 0.97

7 20 7.7e-07 6.6e-05 23.5 2.7 1 23 609 631 609 631 0.97

8 20 8.1e-05 0.007 17.1 6.7 1 23 637 659 637 659 0.97

9 20 0.00027 0.023 15.5 5.5 1 23 665 687 665 687 0.97

10 20 3.9e-07 3.3e-05 24.4 1.9 1 23 693 715 693 715 0.98

11 20 9.5e-06 0.00082 20.0 7.9 1 23 721 743 721 743 0.98

12 20 4e-05 0.0034 18.1 6.3 1 23 749 771 749 771 0.98

13 20 1.9e-05 0.0017 19.1 6.6 1 23 777 799 777 799 0.98

14 20 2.2e-05 0.0019 18.9 2.6 1 21 805 825 805 825 0.95

15 20 7.1e-05 0.0061 17.3 7.2 1 23 848 870 848 870 0.97

16 20 9.6e-06 0.00083 20.0 5.8 1 23 876 898 876 898 0.98

17 20 2e-06 0.00018 22.1 6.1 1 23 904 926 904 926 0.97

18 20 4.1e-06 0.00035 21.2 3.7 1 23 932 954 932 954 0.96

19 20 0.00043 0.037 14.8 0.3 1 23 961 983 961 983 0.96

20 20 0.002 0.17 12.7 4.5 1 23 992 1014 992 1014 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.4e-05	0.0055	17.4	2.2	1	23	428	450	428	450	0.97
2	20	0.00074	0.064	14.1	0.7	1	20	456	475	456	478	0.94
3	20	1.7e-05	0.0014	19.3	4.4	1	23	497	519	497	519	0.98
4	20	0.00015	0.013	16.3	4.7	1	23	525	547	525	547	0.99
5	20	2.9e-05	0.0025	18.5	5.3	1	23	553	575	553	575	0.97
6	20	0.00091	0.078	13.8	10.1	1	23	581	603	581	603	0.97
7	20	7.7e-07	6.6e-05	23.5	2.7	1	23	609	631	609	631	0.97
8	20	8.1e-05	0.007	17.1	6.7	1	23	637	659	637	659	0.97
9	20	0.00027	0.023	15.5	5.5	1	23	665	687	665	687	0.97
10	20	3.9e-07	3.3e-05	24.4	1.9	1	23	693	715	693	715	0.98
11	20	9.5e-06	0.00082	20.0	7.9	1	23	721	743	721	743	0.98
12	20	4e-05	0.0034	18.1	6.3	1	23	749	771	749	771	0.98
13	20	1.9e-05	0.0017	19.1	6.6	1	23	777	799	777	799	0.98
14	20	2.2e-05	0.0019	18.9	2.6	1	21	805	825	805	825	0.95
15	20	7.1e-05	0.0061	17.3	7.2	1	23	848	870	848	870	0.97
16	20	9.6e-06	0.00083	20.0	5.8	1	23	876	898	876	898	0.98
17	20	2e-06	0.00018	22.1	6.1	1	23	904	926	904	926	0.97
18	20	4.1e-06	0.00035	21.2	3.7	1	23	932	954	932	954	0.96
19	20	0.00043	0.037	14.8	0.3	1	23	961	983	961	983	0.96
20	20	0.002	0.17	12.7	4.5	1	23	992	1014	992	1014	0.99

Sequence Information

Coding Sequence: ATGAATACAGAACATCATAGTATCAATACGGGTGGTGGCCAACCTCCTGGTAACTCAGAGTCTCAAAATCAAAGAGTATCATCTTCTCAGCAACAACAATCAAACAATAATCTACCTCCCACTACTTCTGCTACCGACCTACGAGTTAATTCGGCAGCTGTTAACGTTGCTTTGTCCAGTGTCGCTAAGTATTGGGTATTTACAAATCTTTTTCCCGGGCCAATACCTCAAGTTTCTGTGTATGGGCTCCCACCTAATGCAAGGCTTGAAAATGGAAAACCTGTGCAGGAACTAGGCCAAGCTCACGCTGGACTTCTGAATGGTGATCCTAACCTTATTCTCGGCCAGCACGGAGGGCAACCGCTATCTGTATCAGGACCAAGTGGTCAACAAATACCCGTCACTCAAATTATTGCAACACAGTTGCAATCCGGGCAGTCGCATGAATCATTGGGTGCGCATGGTCAGCAGCAAGATCACAGCCAGCAGAACTCTGGCAACGCGAGCCAAGGCTCGGTTAGCACAAGTCAGCCCTCGCACCAGCAGGTACCCAATAACCGGGTCGACTTTATACAACACCATAACACTGATATGGTAAATTATGTGGGTCATCATTCCCAACAACATTCAATGCAACAACAACAGCTGATGTCAGCCAATCGGGACCATACAAATCAACAGATACAACTAACAGTGAGTGAAGATGGAATTGTGACTGTGGTGGAACCGGGCGGAGGCAAGGTTGTGGACAAAGAGGAGATGCATGACGCCATCAAGATGCCAACAGACCATACCCTGACTGTTCATCAGCTGCAGCAGATTGTTGGACATCATCAGGTGATAGACAGCGTTGTTCGTATAGAACAAGCAACAGGCGAACCCGCTAATATACTTGTGACACAAAACCCCGATGGGACCACATCTATAGAGACCAGCGCATCTGAACAACTTATAGTGAAAGATGAGAAAAACGTTGCAAAAATTGAATCTACACAATTTGCAATACCCGCCGATATTAAGGACATCAAAGGGCTTGACTTAAAGAATGTGGGAACAATGGGTATGGAGGGAGCGGTTGTGAAAATCTCAGCTGGCGCTTCAGAACACGACTTGCATGCAATGTATAAAGTTAATGTTGAGGACCTCTCTCATCTGTTGGCTTACCATGAAGTTTTTGGTAAACTCAATCCCGAGGGGCAACCACAACCCAAGCCTATGAACGAAGTGGATGAAGCGGGAACTAGCGCCGCCATTGCAGAATCTGATACCTCGCCTGGACACCACTCTTGTGATATCTGCGGGAAGATATTCCAGTTCCGATACCAACTTATTGTACACAGACGATACCATGGCGAGAGCAAACCTTACACATGTCAAGTTTGTGGTACTGCTTTCGCTAATGCCATGGAACTATCCAGACATGGAAAATGTCATCTTGCCGGTGACCCTGCAGAGAGACAAACCAAACGGCTGACGCAAGACAAGCCATATGCCTGCACAACTTGCCACAAAGCATTCTCACGTAAGGAACACTTGGACAATCATGTACGAAGCCACACTGGAGAAACGCCTTACAGATGTCAGTTCTGTGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACTCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACGCCGCATCATTGTCACATATGTTTGAAGAAGTATACTAGGAAGGAGCATTTAGTGAATCATATGCGATCTCACACGAACGACACACCGTTCCGATGTGAGCTGTGTGGCAAGTCCTTCACCAGAAAGGAACACTACACCAATCACATTCTCTGGCATACTGGCGAAACACCGCATCGTTGCGACTTCTGTTCGAAAACGTTCACCCGCAAAGAGCACCTGTTGAACCACGTGCGGCAACACACGGGCGAGTCGCCGCATCGCTGCAGCTTCTGCGCCAAGTCCTTCACACGCCGCGAACACCTCGTCAACCACGTGCGACAGCACACTGGCGAGACGCCATTCCAGTGCGGGTACTGTCCAAAAGCGTTCACCAGAAAAGATCATTTAGTGAACCACGTGCGCCAGCACACCGGGGAGTCCCCGCACAAGTGCTCGTACTGCACGAAGACGTTCACGCGCAAGGAGCATCTCACCAACCACGTGCGGCAACACACGGGCGAGTCGCCGCATCGCTGCACCTACTGCGCCAAGTCCTTCACGCGCAAGGAGCACCTCGCCAACCACACCAGACAGCATACGGGCGAAACTCCTCACAAGTGCACGTACTGCACGCGGTCGTTCGCGCGCAAGGAGCACCTCACGAACCACGTGCGCCAGCACACCGGCGACATGCCGCACCCCTGCTCCTACTGCAACAAGCGGTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGGTGCGTATACTCCCCCCCCAACCCTCCCCTACCTCCCCTCGTGCGACTGCATACGGGCGAGACTCCGTTCAAGTGCACGTATTGCACGAAGGAGTTCTCCCGCAAGGAGCACCTCACCAACCACGTGCACCAGCACACCGGGGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACCTACTCCCGCAAGGAACATTTGACCAACCACGTCAGAATCCACACGGGCGAGTCGCCGCACCGCTGCGAGTACTGCGACAAGACGTTCACGCGCAAGGAGCACCTCATCAACCACCTGAAGCAGCACACGGGCGACACGCCGCACGCCTGCAAGGTCTGCTCCAAGCCCTTCACCAGGAAAGAGCACCTCATGACGCatatgagAGCACACAACTGCGGCGAGAGACCGTACTCGTGCGGGGAGTGCGGCAAGTCGTTCCCATTGAAAGGCAATCTACTGTTCCACGAGCGGTCGCATCAGAAGGGCGGCGGAAACAGACCCTTCAGATGCGATATTTGCTCCAAGGACTTTATTTGCAAAGGTCACTTGGTGTCGCACCAGCGCACGCACCAGACGGCGGGTGAGACTGCGCCCGGCGAGCAGCAGCCCGTCGCGCCCGTCGCCCCCGACGCAGCCAAGGACGCCGCCGACCGTGCTGACCGCAAACACGACGTTAGAGCAACAACTAACGAAAACAGACCAACAGAAGAAGAGGTCGCCCAGAGTCAGCAGAATAATGCTGTTATGCAAATTACTAGCCAGGTCCGAGGCGGTACGAGCAGCGCGACCAGTGTGGCGACGTTTACGCACACGCCTAACGCGCAGCACCACGCCGGCGGTGTCGCGCACCATCCCGTCACTGTCAACTACTAG
Protein Sequence: MNTEHHSINTGGGQPPGNSESQNQRVSSSQQQQSNNNLPPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPPNARLENGKPVQELGQAHAGLLNGDPNLILGQHGGQPLSVSGPSGQQIPVTQIIATQLQSGQSHESLGAHGQQQDHSQQNSGNASQGSVSTSQPSHQQVPNNRVDFIQHHNTDMVNYVGHHSQQHSMQQQQLMSANRDHTNQQIQLTVSEDGIVTVVEPGGGKVVDKEEMHDAIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSASEQLIVKDEKNVAKIESTQFAIPADIKDIKGLDLKNVGTMGMEGAVVKISAGASEHDLHAMYKVNVEDLSHLLAYHEVFGKLNPEGQPQPKPMNEVDEAGTSAAIAESDTSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGTAFANAMELSRHGKCHLAGDPAERQTKRLTQDKPYACTTCHKAFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCHICLKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKTFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLANHTRQHTGETPHKCTYCTRSFARKEHLTNHVRQHTGDMPHPCSYCNKRFTRKEHLVNHVRCVYSPPNPPLPPLVRLHTGETPFKCTYCTKEFSRKEHLTNHVHQHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCEYCDKTFTRKEHLINHLKQHTGDTPHACKVCSKPFTRKEHLMTHMRAHNCGERPYSCGECGKSFPLKGNLLFHERSHQKGGGNRPFRCDICSKDFICKGHLVSHQRTHQTAGETAPGEQQPVAPVAPDAAKDAADRADRKHDVRATTNENRPTEEEVAQSQQNNAVMQITSQVRGGTSSATSVATFTHTPNAQHHAGGVAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01157022;
90% Identity: iTF_01148985;
80% Identity: -