Basic Information

Insect: Papilio xuthus
Gene Symbol: -
Assembly: GCA_000836235.1
Location: NW:826035-840727[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.1e-05 0.0035 17.4 2.2 1 23 427 449 427 449 0.97

2 20 0.00072 0.041 14.1 0.7 1 20 455 474 455 477 0.94

3 20 1.6e-05 0.00091 19.3 4.4 1 23 496 518 496 518 0.98

4 20 0.00014 0.0082 16.3 4.7 1 23 524 546 524 546 0.99

5 20 2.8e-05 0.0016 18.5 5.3 1 23 552 574 552 574 0.97

6 20 0.00087 0.05 13.8 10.1 1 23 580 602 580 602 0.97

7 20 7.4e-07 4.2e-05 23.5 2.7 1 23 608 630 608 630 0.97

8 20 7.8e-05 0.0044 17.1 6.7 1 23 636 658 636 658 0.97

9 20 0.00026 0.015 15.5 5.5 1 23 664 686 664 686 0.97

10 20 3.7e-07 2.1e-05 24.4 1.9 1 23 692 714 692 714 0.98

11 20 9.2e-06 0.00052 20.0 7.9 1 23 720 742 720 742 0.98

12 20 3.8e-05 0.0022 18.1 6.3 1 23 748 770 748 770 0.98

13 20 1.9e-05 0.0011 19.1 6.6 1 23 776 798 776 798 0.98

14 20 7.4e-06 0.00042 20.3 4.9 1 23 804 826 804 826 0.97

15 20 6.8e-05 0.0039 17.3 7.2 1 23 832 854 832 854 0.97

16 20 9.3e-06 0.00053 20.0 5.8 1 23 860 882 860 882 0.98

17 20 2e-06 0.00011 22.1 6.1 1 23 888 910 888 910 0.97

18 20 6.1e-06 0.00035 20.6 4.9 1 23 916 938 916 938 0.96

19 20 0.00042 0.024 14.8 0.3 1 23 973 995 973 995 0.96

20 20 0.0019 0.11 12.7 4.5 1 23 1004 1026 1004 1026 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.1e-05	0.0035	17.4	2.2	1	23	427	449	427	449	0.97
2	20	0.00072	0.041	14.1	0.7	1	20	455	474	455	477	0.94
3	20	1.6e-05	0.00091	19.3	4.4	1	23	496	518	496	518	0.98
4	20	0.00014	0.0082	16.3	4.7	1	23	524	546	524	546	0.99
5	20	2.8e-05	0.0016	18.5	5.3	1	23	552	574	552	574	0.97
6	20	0.00087	0.05	13.8	10.1	1	23	580	602	580	602	0.97
7	20	7.4e-07	4.2e-05	23.5	2.7	1	23	608	630	608	630	0.97
8	20	7.8e-05	0.0044	17.1	6.7	1	23	636	658	636	658	0.97
9	20	0.00026	0.015	15.5	5.5	1	23	664	686	664	686	0.97
10	20	3.7e-07	2.1e-05	24.4	1.9	1	23	692	714	692	714	0.98
11	20	9.2e-06	0.00052	20.0	7.9	1	23	720	742	720	742	0.98
12	20	3.8e-05	0.0022	18.1	6.3	1	23	748	770	748	770	0.98
13	20	1.9e-05	0.0011	19.1	6.6	1	23	776	798	776	798	0.98
14	20	7.4e-06	0.00042	20.3	4.9	1	23	804	826	804	826	0.97
15	20	6.8e-05	0.0039	17.3	7.2	1	23	832	854	832	854	0.97
16	20	9.3e-06	0.00053	20.0	5.8	1	23	860	882	860	882	0.98
17	20	2e-06	0.00011	22.1	6.1	1	23	888	910	888	910	0.97
18	20	6.1e-06	0.00035	20.6	4.9	1	23	916	938	916	938	0.96
19	20	0.00042	0.024	14.8	0.3	1	23	973	995	973	995	0.96
20	20	0.0019	0.11	12.7	4.5	1	23	1004	1026	1004	1026	0.99

Sequence Information

Coding Sequence: ATGAATACAGAACATCACAGTATCAATACGGGTGGTGGCCAACCTCCTGGTAACTCCGAGtcTCAAAATCAAAGAGTATCATCTTCCCAGCAACAACAACAATCAAGTAATAATCTGCCTCCCACTACTTCTGCTACCGACCTACGAGTTAATTCGGCAGCTGTTAACGTTGCTTTGTCCAGTGTCGCTAAGTATTGGGTGTTTACAAATCTTTTTCCCGGGCCAATACCTCAAGTTTCTGTGTATGGCCTGCCACCTAATGCAAGGCTTGAAAACGGAAAACCTGTGCAGGAATTGAGCCAAGCTCATGCCGGACTGCTGAATGGTGATCCTAACCTTATTCTCGGTCAGCACAGTGGGCAACCGCAGCTATCTGTATCAGGACCTAGTGGCCAACAAATACCTGTCACTCAAATTATCGCAACACAATTACAATCTGGACAGACGCATGAATCATTGGGGGCGCACAGTCAGCAACAAGATCACAATACTCAGCAGAACTCTGGGAACACAAGCCAAGGCTCGGTTAGCACAAGCCAGCCCTCTCACCAGCAGGTACCCAATAATCGGGTCGACTTTATACAACACCATAACACTGATATGGGCCATCATTCCCAACAACATACAATGCAACAACAACAGCTCATGGCAACCAATCGTGACCACGCAAATCAACagaTACAGCTAACAGTAAGCGAAGATGGCATTGTGACTGTGGTGGAGCCGGGCGGAGGCAAAGTTGTGGACAAAGAGGAGATGCATGACGCTATCAAAATGCCCACAGACCACACACTGACAGTTCATCAGCTACAGCAGATTGTCGGACATCATCAGGTGATAGACAGTGTTGTTCGTATAGAACAAGCCACAGGCGAACCCGCTAATATACTCGTGACTCAAAACCCTGATGGGACCACATCTATAGAGACCAGTGCATCTGAACAGCTTATAGTCAAAGACGAGAAAAACGTTGCGAAAATTGAATCCACACAATTTGCAATACCCGCAGATATTAAGGACATCAAAGGACTTGATTTAAAGAGTGTGGGATCAATGGGTATGGAAGGAGCGGTTGTGAAAATATCAGCGGGCGCCTCAGAACACGACTTGCATGCAATGTATAAAGTTAATGTTGAGGATCTCTCACATTTGTTGGCTTACCATGAAGTTTTTGGTAAACTCAATCCCGAGGGCCAACCACAACCCAAgCCTATAAACGAAGTAGACGAAGCGGGAACTAGCGCTGCCATAGCCGAATCTGATACATCTCCCGGACACCATTCCTGTGACATCTGTGGCAAGATATTCCAGTTCCGATACCAACTTATTGTTCACAGACGATACCACGGCGAGAGCAAACCTTACACATGTCAAGTTTGCGGCACTGCATTTGCTAATGCCATGGAACTTTCCAGACACGGGAAATGTCATCTTGCTGGGGATCCTGCAGAGAGACAAACCAAACGGCTGACCCAAGACAAGCCGTACGCCTGCACTACTTGCCACAAAGCGTTCTCACGAAAAGAGCATTTGGACAATCATGTACGAAGCCACACCGGAGAAACACCTTACAGATGTCAGTTCTGTGCGAAGACTTTCACTCGCAAGGAGCATATGGTGAACCACGTGCGCAAGCACACCGGGGAGACGCCGCATCGCTGTGACATCTGCAAGAAGAGTTTCACCCGCAAGGAACACTTCATGAACCACGTCATGTGGCATACAGGTGAAACGCCGCATCATTGTCACATATGTTTGAAGAAGTATACTAGGAAGGAGCATTTAGTGAATCATATGCGATCTCACACGAACGATACACCGTTCCGATGTGAACTGTGTGGCAAGTCCTTCACCAGAAAGGAACATTACACCAATCACATTCTTTGGCATACTGGCGAGACACCGCATCGCTGCGACTTCTGTTCAAAAACGTTCACCCGCAAGGAGCACTTGTTGAACCACGTGCGGCAACACACGGGCGAGTCGCCGCATCGCTGCAGCTTCTGCGCCAAGTCCTTCACACGTCGCGAGCACCTCGTCAACCACGTGCGCCAGCACACCGGGGAGACGCCATTCCAGTGCGGCTACTGTCCTAAGGCCTTCACCAGGAAAGATCACTTAGTGAACCATGTCCGTCAGCATACCGGGGAGTCTCCTCATAAGTGTTCCTACTGCACGAAGACGTTCACACGCAAGGAGCATCTGACCAACCACGTGCGTCAGCACACGGGCGAGTCGCCGCATCGCTGCACATACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCGCCAACCACACCAGACAGCATACGGGCGAAACTCCTCACAAGTGCACGTACTGCACGCGGTCGTTCGCGCGCAAGGAGCACCTCACGAACCACGTGCGCCAGCACACGGGCGACATGCCGCACCCCTGCTCCTACTGCAACAAGCGGTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGATTGCATACGGGCGAGACTCCGTTCAAGTGCACGTATTGTACGAAGGAGTTCTCCCGCAAGGAGCACCTGACCAACCACGTTCACCAGCACACCGGGGAGACGCCACACAAGTGTCCTTTCTGCACCAAGACATACTCCCGCAAGGAACATTTGACCAACCACGTCAGAATCCACACCGGGGAGTCGCCGCACCGGTGCGAGTACTGTGACAAGACATTCACGCGCAAGGAGCACCTCATCAACCACCTGAAGCAGCACACGGGCGACACACCTCACGCCTGCAAGGTCTGCTCCAAGCCATTCACCAGGAAGGAGCATCTTATGACGCATATGAGGTATCACATGACAACATTCTGTACATTTAACCGACATACAACGATATATGATTGTAATAAACctcaactttatttttttcccaGAGCGCACAACTGTGGCGAGAGACCGTACTCATGTGGTGAATGTGGCAAATCCTTCCCCTTGAAAGGTAACCTGCTGTTCCACGAGCGATCGCATCAAAAAGGCGGCGGGAACAGACCATTCCGATGCGATATTTGCTCCAAGgattttatttgcaaagGTCACTTGGTGTCGCACCAGCGCACGCACCAGCCGGCGGGCGAAGCGGCAGCCGGCGAGCAACCCGCCGCGCCTGAGCCTTGCGACAAGGACGCTGCTGACCGCCCCGAGCGCAAGCACGACATCAGAACAACAACTAACGAAAACAGACCGACAGAAGAAGAGGTCGCTCAAAGTCAGCAAAATAATGCTGTTATGCAAATTACAAGCCAGGTTCGCGGCGGAACTAGTAGCGCTAGCGGTGTGTCGACGTTCCCGCACACATCTAACGCGCAGCACCACGCCGGCGGGGTCGCGCACCATCCAGTCACCGTCAACTACTAG
Protein Sequence: MNTEHHSINTGGGQPPGNSESQNQRVSSSQQQQQSSNNLPPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPPNARLENGKPVQELSQAHAGLLNGDPNLILGQHSGQPQLSVSGPSGQQIPVTQIIATQLQSGQTHESLGAHSQQQDHNTQQNSGNTSQGSVSTSQPSHQQVPNNRVDFIQHHNTDMGHHSQQHTMQQQQLMATNRDHANQQIQLTVSEDGIVTVVEPGGGKVVDKEEMHDAIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSASEQLIVKDEKNVAKIESTQFAIPADIKDIKGLDLKSVGSMGMEGAVVKISAGASEHDLHAMYKVNVEDLSHLLAYHEVFGKLNPEGQPQPKPINEVDEAGTSAAIAESDTSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGTAFANAMELSRHGKCHLAGDPAERQTKRLTQDKPYACTTCHKAFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCHICLKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKTFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLANHTRQHTGETPHKCTYCTRSFARKEHLTNHVRQHTGDMPHPCSYCNKRFTRKEHLVNHVRLHTGETPFKCTYCTKEFSRKEHLTNHVHQHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCEYCDKTFTRKEHLINHLKQHTGDTPHACKVCSKPFTRKEHLMTHMRYHMTTFCTFNRHTTIYDCNKPQLYFFPRAHNCGERPYSCGECGKSFPLKGNLLFHERSHQKGGGNRPFRCDICSKDFICKGHLVSHQRTHQPAGEAAAGEQPAAPEPCDKDAADRPERKHDIRTTTNENRPTEEEVAQSQQNNAVMQITSQVRGGTSSASGVSTFPHTSNAQHHAGGVAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01157022;
90% Identity: iTF_01148985;
80% Identity: -