Basic Information

Insect: Heliconius hermathena
Gene Symbol: -
Assembly: GCA_013403705.1
Location: JAAIXJ010000150.1:80868-97564[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.6e-05 0.0047 17.5 2.2 1 23 417 439 417 439 0.97

2 18 0.0048 0.34 11.6 0.7 1 20 445 464 445 467 0.94

3 18 1.8e-05 0.0013 19.3 5.4 1 23 486 508 486 508 0.98

4 18 0.00015 0.011 16.3 4.7 1 23 514 536 514 536 0.99

5 18 2.9e-05 0.0021 18.6 5.3 1 23 542 564 542 564 0.97

6 18 9.4e-06 0.00066 20.2 7.3 1 23 570 592 570 592 0.97

7 18 6.2e-07 4.3e-05 23.9 2.9 1 23 598 620 598 620 0.97

8 18 8.4e-05 0.0059 17.2 6.7 1 23 626 648 626 648 0.97

9 18 0.00019 0.013 16.0 5.6 1 23 654 676 654 676 0.97

10 18 4e-07 2.8e-05 24.5 1.9 1 23 682 704 682 704 0.98

11 18 3.9e-05 0.0028 18.2 8.1 1 23 710 732 710 732 0.98

12 18 6.5e-06 0.00046 20.7 6.6 1 23 738 760 738 760 0.98

13 18 5.6e-06 0.00039 20.9 5.8 1 23 766 788 766 788 0.98

14 18 3.3e-05 0.0024 18.4 6.1 1 23 794 816 794 816 0.97

15 18 1.8e-05 0.0013 19.3 7.1 1 23 822 844 822 844 0.97

16 18 2.5e-05 0.0017 18.8 7.8 1 23 859 881 859 881 0.97

17 18 0.001 0.073 13.7 0.6 1 23 904 926 904 926 0.95

18 18 0.0014 0.098 13.3 3.8 1 23 937 959 937 959 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.6e-05	0.0047	17.5	2.2	1	23	417	439	417	439	0.97
2	18	0.0048	0.34	11.6	0.7	1	20	445	464	445	467	0.94
3	18	1.8e-05	0.0013	19.3	5.4	1	23	486	508	486	508	0.98
4	18	0.00015	0.011	16.3	4.7	1	23	514	536	514	536	0.99
5	18	2.9e-05	0.0021	18.6	5.3	1	23	542	564	542	564	0.97
6	18	9.4e-06	0.00066	20.2	7.3	1	23	570	592	570	592	0.97
7	18	6.2e-07	4.3e-05	23.9	2.9	1	23	598	620	598	620	0.97
8	18	8.4e-05	0.0059	17.2	6.7	1	23	626	648	626	648	0.97
9	18	0.00019	0.013	16.0	5.6	1	23	654	676	654	676	0.97
10	18	4e-07	2.8e-05	24.5	1.9	1	23	682	704	682	704	0.98
11	18	3.9e-05	0.0028	18.2	8.1	1	23	710	732	710	732	0.98
12	18	6.5e-06	0.00046	20.7	6.6	1	23	738	760	738	760	0.98
13	18	5.6e-06	0.00039	20.9	5.8	1	23	766	788	766	788	0.98
14	18	3.3e-05	0.0024	18.4	6.1	1	23	794	816	794	816	0.97
15	18	1.8e-05	0.0013	19.3	7.1	1	23	822	844	822	844	0.97
16	18	2.5e-05	0.0017	18.8	7.8	1	23	859	881	859	881	0.97
17	18	0.001	0.073	13.7	0.6	1	23	904	926	904	926	0.95
18	18	0.0014	0.098	13.3	3.8	1	23	937	959	937	959	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCATCATAGTATTAATACGGGTGGTGGCCAACCTCCAGGCAATTCCGAGTCTCAGAACCCAAGAGTTCAGTCGACACAGCAACAACAGCCGAcgcaaacaaataatttaacacCTACAACATCTGCTACCGATTTGAGAGTCAACTCGGCGGCGGTAAACGTTGCCCTGTCGAGCGTGGCTAAATACTGGGTGTTTACTAATTTGTTTCCCGGTCCATTGCCTCAAGTTTCTGTCTACGGTTTACCTACTGGTGCACGAATTGAAAATGGGAAACCTGTACaggaTCTTGGTCAAGCTCATGCAAGTATTTTGAATGGAgatcctaatattatattagggcATGCCGGGCAACCGCAAGTTACAGTTTCCGCTGCAGGTCAACAAATACCTGTATCACAAATTATTGCTAATCAAGCATCGCAAGGACATgAGACTCTGGTGGGGCATACACAGCAACAAGAAACTGCGAGTAGCAGTGCTCCATTGGCAGTTGCTCAAACCCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCAAGTGGGTCATCATTCACAGCAGCATATCATGCAGCAGCAGCTGATGGCGGCCGCGCGTCCCGAACACGCAAACCAACAGATTCAACTGACAGTAAGCGAGGATGGCATAGTAACAGTGGTGGAGcctggcggcggcggcgggaaGCTCGTCGAGAAGGAAGAGCTCCATGAAACAATCAAAATGCCTACAGACCACACGCTCACTGTGCACCAGTTGCAACAGATTGTGATCGACAGCGTGGTGCGCATCGAGCAGGCGACGGGCGAGCCCGCCAATATACTGGTGACGCAGAACCCCGACGGCACCACCTCCATAGAGACCAGCGCCGCCGACCCGTTGCTCGTCAAAGATGAGAAAAATGTCGCTAAAATTGAGTCCGCCCAATTTGCTATACCGGCGgaaattaaagatattaaaggAATCGATTTAAAGAGTGTTGGAGCTATGGGCATGGAGGGAGCGGTGGTCAAGATTTCAGCGGCAACTGAACACGACCTCCAACATGCCATGTATAAAGTGAATGTAGAAGATCTCTCTCAACTATTGGCCTACCACGAAGTATTTGGGAAACTTAATACTGATAATCCACAACAGCCTAAGGTAATAACTGAAGTAGACGTGGAGGCCGGCACCAGCGCCGCCATGTCGGAGGCGGAGTCGTCTCCCGGACATCACTCTTGCGACATATGTGGGAAGATATTCCAATTCCGATACCAACTTATCGTTCATaggcGCTACCACGGAGAGAGCAAACCGTTTACGTGTCAAGTATGTGGGTCCGCATTTGCTAATCCGGTGGAATTGTCAAAACACGGAAAATGTCACTTGGCCGGTGATCCCGCTGAGCGTCAAGCAAAGAGACTGGCACAAGATAAGCCATACGCATGCTCTACTTGCCATAAGACATTCTCACGTAAGGAGCACCTAGACAACCATGTACGGAGTCACACTGGGGAAACTCCTTACAGATGTCAATTCTGCGCAAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACGCCGCACCGCTGCGAGATATGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACTGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCGCACACGAACGACACCCCGTTCAGGTGCGATCTGTGCGGGAAGTCCTTCACCAGGAAGGAACACTTCACCAATCACATATTGTGGCACACCGGTGAAACTCCACATCGATGCGACTTCTGCTCTAAAACCTTCACTCGTAAAGAGCACCTGTTAAACCATGTGCGTCAGCATACAGGGGAATCACCGCATCGATGCAATTTCTGTGCGAAGTCCTTCACAAGACGAGAACATTTGGTTAATCATGTGCGACAACACACCGGTGAAACACCTTTCCAATGCGGATATTGCCCTAAAGCTTTTACTAGGAAAGATCATTTAGTTAATCATGTTCGTCAACACACGGGAGAGTCCCCACATAAATGTACATTCTGTACGAAATCTTTTACACGCAAAGAGCATTTAACAAATCATGTGCGACAACACACCGGGGAATCCCCTCATCGATGTACATACTGCGCCAAGTCTTTCACTAGAAAGGAACATCTAACAAATCATATAAGACAGCATACGGGCGAGACTCCCCACAAGTGCACGTACTGCCCGCGCGAGTTCTCGCGCAAGGACCACCTGCAGCAGCACGTGCGCCAGCACACGGGCGACGCGCCGCACACCTGCAGCTACTGCAGCAAGAGCTTCACCAGGAAGGAGCACCTCGTCACGCACGCCAGACAACATACCGGCGAAACTCCATTCAAATGCACGTACTGCTCGAAGTCGTTCTCGCGTAAGGAGCACCTCACGAACCACGTGCATCTTCACACTGGTGAAACACCGCACAAaATACACACAGGCGAATCTCCTCACAGATGCGAGTTCTGTAACAAAACATTCACAAGAAAGGAGCATTTGACCAATCACTTGAAGCAGCACACTGGTGATACGCCGCACGCGTGCAAGATATGCTCCAAACCATCCCACAGTTGTGGAGAGAGACCACACGTTTGCGGTGAATGTGGAAAATCCTTCCCCCTCAAGGGTAATCTGCTGTTTCACGAGCGGTCACACAATAAAGGCGCTAACGCGTCAAACAAGACGTTCCGTTGTGACGTGTGCTCCAAGGAGTTTATGTGCAAAAGTAATTTAGCATCCCATCGAAGAACCCACACAGAAACGGGCGAAGGCACTACAACTACAGAGCCCACACCTGAAAACGAAGATTGTGGAGATTGCACCAAGTGCGATAAAGAGTCACCAGAAAGACCTGAGAGGAAACACGATACAAGagcGTCATCAGAAAGCAGAGCTACAGAAGCAACTGCTACACAAAATCCATCGCCAAATCCAAACCCAACTGTCATGCAAATTAATAGCCAgCAAGTGCGAACGGGCGCTACAACGACCACGAGCGTAGCAACGGGCACGTTCACCCACACTGCCACCACACAGCACCACGCCTCTACCAGTATAGCCCACCATCCTGTTACTGTGAATTACTAG
Protein Sequence: MNPDHHSINTGGGQPPGNSESQNPRVQSTQQQQPTQTNNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPTGARIENGKPVQDLGQAHASILNGDPNIILGHAGQPQVTVSAAGQQIPVSQIIANQASQGHETLVGHTQQQETASSSAPLAVAQTQQVPNNRVEFVQHHNIDMVNQVGHHSQQHIMQQQLMAAARPEHANQQIQLTVSEDGIVTVVEPGGGGGKLVEKEELHETIKMPTDHTLTVHQLQQIVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLLVKDEKNVAKIESAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAATEHDLQHAMYKVNVEDLSQLLAYHEVFGKLNTDNPQQPKVITEVDVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPREFSRKDHLQQHVRQHTGDAPHTCSYCSKSFTRKEHLVTHARQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKIHTGESPHRCEFCNKTFTRKEHLTNHLKQHTGDTPHACKICSKPSHSCGERPHVCGECGKSFPLKGNLLFHERSHNKGANASNKTFRCDVCSKEFMCKSNLASHRRTHTETGEGTTTTEPTPENEDCGDCTKCDKESPERPERKHDTRASSESRATEATATQNPSPNPNPTVMQINSQQVRTGATTTTSVATGTFTHTATTQHHASTSIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01157022;
90% Identity: iTF_00775426; iTF_00781188; iTF_00723334; iTF_00779657; iTF_00621387; iTF_00457388; iTF_00776855; iTF_00458232; iTF_01182043; iTF_00780413; iTF_00781994;
80% Identity: -