Papo024658.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius apollo
Gene Symbol
-
Assembly
GCA_907164705.1
Location
CAJQZP010001486.1:1173742-1220590[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 6.7e-05 0.0068 17.4 2.2 1 23 434 456 434 456 0.97
2 21 0.0041 0.41 11.8 0.5 1 20 462 481 462 484 0.94
3 21 1.7e-05 0.0018 19.3 5.6 1 23 503 525 503 525 0.98
4 21 0.00016 0.016 16.3 4.7 1 23 531 553 531 553 0.99
5 21 3.1e-05 0.0031 18.5 5.3 1 23 559 581 559 581 0.97
6 21 9.5e-06 0.00096 20.1 7.3 1 23 587 609 587 609 0.97
7 21 8e-07 8.2e-05 23.5 2.7 1 23 615 637 615 637 0.97
8 21 8.5e-05 0.0086 17.1 6.7 1 23 643 665 643 665 0.97
9 21 0.00012 0.012 16.6 6.5 1 23 671 693 671 693 0.97
10 21 4.1e-07 4.1e-05 24.4 1.9 1 23 699 721 699 721 0.98
11 21 1.1e-05 0.0011 19.9 6.3 1 23 727 749 727 749 0.96
12 21 6.6e-06 0.00067 20.6 6.6 1 23 755 777 755 777 0.98
13 21 5.1e-06 0.00052 20.9 6.3 1 23 783 805 783 805 0.98
14 21 5e-06 0.0005 21.0 4.4 1 23 811 833 811 833 0.97
15 21 8e-06 0.00081 20.3 6.4 1 23 839 861 839 861 0.97
16 21 1e-05 0.001 20.0 5.8 1 23 867 889 867 889 0.98
17 21 1.2e-05 0.0012 19.8 7.2 1 23 895 917 895 917 0.97
18 21 6.9e-06 0.0007 20.5 4.5 1 23 923 945 923 945 0.97
19 21 0.00045 0.046 14.8 0.3 1 23 952 974 952 974 0.96
20 21 0.0019 0.19 12.9 5.0 1 23 983 1005 983 1005 0.99
21 21 8.5 8.6e+02 1.4 0.3 2 11 1023 1032 1023 1038 0.84

Sequence Information

Coding Sequence
ATGAATCCCGAACACCATAATATCAATACGGGTGGCGGCCAACCTGGTAATTCAGAGTCACAAAATCAAAGGGTTTCATCTGCTCAACAgcagcaacaacaacaacaacaacaacaacagtcAGCCAATAATTTGACCCCCACAACTTCTGCTACCGATTTGCGAGTTAACTCAGCTGCTGTAAATGTTGCTTTGTCAAGCGTCGCGAAATATTGGGTGTTCACAAATTTATTTCCCGGTCCTATACCTCAAGTTTCTGTATATGGATTACCTACTAACACAAGAATTGAAAATGGAAAACCTATGCAGgaCCTTGGCCAGGCTCATGCAGGTCTTCTGAATGGTGATCCAAACCTTATACTTGGTCAGCATGCAGGACAACCACAATTATCTGTATCCGGACCTGGTGGTCAACAAATACCTGTGACACAAATAATTGCAACACAATTGCAATCTGAGCAGACTCATGagTCACTGGTGGCTCACAATCAGCAACAAGATCTTACTTCTCAGCAAGGCTCAGGCAATGGATCGCAGGTCTCAGTTAACACTGGCCAGCCCTCTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTATACAACACCATAACATTGATATGGGGCATCATTCACAACAGCATTCATTGCAGCAACAACTTATGGCAGCTACTCGTCCAGAGCATGCAAATCAACAGATTCAGCTAACTGTGAGCGAAGATGGCATTGTAACTGTGGTAGAGCCCGGTGGAAGCAAGCTTGTTGATAAGGATGAACTACATGAAGCTATCAAAATGCCTACAGATCATACCTTGACAGTGCATCAATTACAACAAATTGTTGGCCATCATCAGGTAATTGATAGTGTGGTTCGCATCGAGCAAGCAACTGGAGAACCAGCAAATATACTTGTTACGCAGAATCCTGATGGAACAACTTCAATAGAAACTAGTGCCGCGGAACAGCTTATAGTGAAAGACGAGAAAAATGTGGGGAAAATTGAATCTGCCCAATTTGCACTACCAACAGATATAAAAGATATCAAGAGTATTGACCTAAAGAGTGTAGGGGCAATGGGTATGGAAGGTGCTGTGGTAAAGATCTCTGCTGGTGCCTCAGAACATGATCTTCATGCAATGTACAAAGTAAATGTGGAGGATCTTTCACAGCTGCTGGCATACCATGAAGTTTTCGGTAAATTGAATACTGAAAATCAACAGCAAGCCAAGGTTATAAGTGAAGTGGGAGTAGAAGCTGGGCCTAGTGCTACCATAGCAGAAACCGACTCATCTCCTGGCCATCATTCCTGTGACATTTGCGggaaaatatttcaatttcgTTACCAACTTATTGTACACagACGATACCATGGTGAGAGTAAACCCTATACATGTCAAGTGTGTGGCTCTGCGTTTGCTAATGCTGTTGAACTATCGCGTCACGGAAAATGTCACCtagCTGGTGACCCTGCTGAGAGACAagcaaaaaaattaacacaagACAAACCCTATGCATGCACAACTTGCCACAAAACGTTCTCCCGAAAAGAGCATCTGGACAACCATGTTCGAAGTCACACTGGAGAGACACCTTATAGGTGTCAGTTTTGTGCAAAGACATTCACCCGTAAGGAGCATATGGTGAACCATGTCCGGAAGCATACTGGTGAAACCCCACATCGTTGTGATATCTGCAAGAAAAGCTTTACCAGGAAAGAACATTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCATCATTGTCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTCAACCATATGAGATCTCATACAAATGACACTCCGTTTCGATGCGAATTGTGCGGCAAGTCATTTACAAGAAAGGAACACTACACCAATCACATACTGTGGCATACGGGTGAAACACCGCACCGGTGTGACTTCTGTTCGAAGACGTTCACGCGCAAGGAGCACCTGCTGAACCACGTGCGGCAGCACACGGGCGAGTCACCGCACCGCTGCAGCTTCTGCTCCAAGTCCTTCACTCGCCGAGAGCACCTCGTCAACCACGTCAGGCAGCACACAGGCGAAACGCCTTTCCAGTGTGGATACTGCCCTAAAGCATTCACTAGAAAGGATCATTTAGTAAACCATGTACGACAACACACAGGAGAATCACCTCACATATGTTCGTATTGTACGAAGTCTTTCACGCGCAAGGAACACTTGACTAATCATGTCCGCCAGCACACGGGAGAGTCGCCGCATCGCTGCACTTATTGTGCTAAATCTTTCACAAGGAAAGAACATCTTACTAATCATATCAGACAGCACACGGGCGAAACTCCACACAAGTGCACGTACTGCTCGCGCGCCTTCTCGCGCAAGGAGCACCTCAACAACCACATCCGGCAGCACACCGGCGACACGCCGCACTCTTGCTCCTATTGCAACAAGACCTTCAAGCGCAAGGAGCAGCTCGTCAACCATGTTCGACAACATACGGGTGAGACTCCGTTCAAATGTACATATTGTACGAAGGCGTTCTCGCGGAAGGAACATCTGACGAATCACATTCACCTTCACACAGGTGAAACACCACACAAATGCCCCTTCTGCACCAAAACATATTCCAGGAAGGAACATTTGACCAACCATGTCAgAATACATACGGGTGAATCACCACATCGCTGTGAATTCTGTGATAAGACATTCACAAGGAAGGAACATCTTACCAACCATTTAAAACAGCACACTGGAGAGACACCATTTCACTGCAAAGTCTGCTCCAAACCTTTCACAAGGAAGGAACACCTTGTAACGCATATGAGGGCGCATAGTTGCGGGGAACGGCCTTACAGTTGTGGAGAATGTGGCAAATCATTTCCACTGAAAGGAAACTTGTTATTCCATGAACGATCACATCAGAAGGGTGGCAGTGGAAGTAAATTTAGGTGTGAAGTTTGTTCAAAGCACTTCATTTGTAAAGGGAATTTAGTATCGCATCAGCGCACTCATACGGCGGCGGGCGAAACTGTACCGAACAGTGAACAAGTCACAGAAGGCGAGCAATGCGGTGATTGTGATAAAGAGACCACTGAGCAGCCTGAACGTAAACATGATATCAGaacTACAAACGAAAATATTTCCACTGAAGAAGATGTAACACAAAACCAACAAAATAACGCTGTTATGCAAATAACTAGCCAGCAAGTACGTGCTGGCTCGGCTACAGGCGGGTCCAGTGTGACAACATTTACCCATACTTCAGCCACGCAACACCACTCCGGCAATGCGATATCTCATCATCCGGTCACTGTAAACTACTAG
Protein Sequence
MNPEHHNINTGGGQPGNSESQNQRVSSAQQQQQQQQQQQQSANNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTNTRIENGKPMQDLGQAHAGLLNGDPNLILGQHAGQPQLSVSGPGGQQIPVTQIIATQLQSEQTHESLVAHNQQQDLTSQQGSGNGSQVSVNTGQPSHQQVPNNRVEFIQHHNIDMGHHSQQHSLQQQLMAATRPEHANQQIQLTVSEDGIVTVVEPGGSKLVDKDELHEAIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAAEQLIVKDEKNVGKIESAQFALPTDIKDIKSIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNTENQQQAKVISEVGVEAGPSATIAETDSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFANAVELSRHGKCHLAGDPAERQAKKLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHICSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCSRAFSRKEHLNNHIRQHTGDTPHSCSYCNKTFKRKEQLVNHVRQHTGETPFKCTYCTKAFSRKEHLTNHIHLHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCEFCDKTFTRKEHLTNHLKQHTGETPFHCKVCSKPFTRKEHLVTHMRAHSCGERPYSCGECGKSFPLKGNLLFHERSHQKGGSGSKFRCEVCSKHFICKGNLVSHQRTHTAAGETVPNSEQVTEGEQCGDCDKETTEQPERKHDIRTTNENISTEEDVTQNQQNNAVMQITSQQVRAGSATGGSSVTTFTHTSATQHHSGNAISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01157022;
90% Identity
iTF_00204511;
80% Identity
-