Pdid005068.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Philaethria dido
Gene Symbol
-
Assembly
GCA_033558755.1
Location
JAKGSA010000182.1:640595-651554[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 7.9e-05 0.0056 17.4 2.2 1 23 419 441 419 441 0.97
2 20 0.0058 0.41 11.6 0.7 1 20 447 466 447 469 0.94
3 20 2.2e-05 0.0015 19.2 5.4 1 23 488 510 488 510 0.98
4 20 0.00018 0.013 16.3 4.7 1 23 516 538 516 538 0.99
5 20 3.5e-05 0.0025 18.6 5.3 1 23 544 566 544 566 0.97
6 20 1.1e-05 0.0008 20.1 7.3 1 23 572 594 572 594 0.97
7 20 7.4e-07 5.2e-05 23.8 2.9 1 23 600 622 600 622 0.97
8 20 0.0001 0.0071 17.1 6.7 1 23 628 650 628 650 0.97
9 20 0.00023 0.016 16.0 5.6 1 23 656 678 656 678 0.97
10 20 4.8e-07 3.4e-05 24.4 1.9 1 23 684 706 684 706 0.98
11 20 4.7e-05 0.0033 18.2 8.1 1 23 712 734 712 734 0.98
12 20 3.4e-06 0.00024 21.7 7.6 1 23 740 762 740 762 0.98
13 20 4.3e-06 0.00031 21.4 6.2 1 23 768 790 768 790 0.98
14 20 9.3e-06 0.00066 20.4 6.4 1 23 796 818 796 818 0.97
15 20 2.2e-05 0.0015 19.2 7.1 1 23 824 846 824 846 0.97
16 20 3e-06 0.00021 21.9 6.0 1 23 852 874 852 874 0.98
17 20 3e-05 0.0021 18.8 7.8 1 23 880 902 880 902 0.97
18 20 4.3e-06 0.00031 21.4 4.1 1 23 908 930 908 930 0.96
19 20 0.0021 0.15 12.9 0.6 1 23 937 959 937 959 0.95
20 20 0.0036 0.25 12.2 4.7 1 23 970 992 970 992 0.99

Sequence Information

Coding Sequence
ATGAATCCGGATCACCATAATATTAATACGGGTGGTGGCCAACCTCCAGGCAATTCCGAGTCTCAGAACCAAAGAGTTCAGTCGACACAGCAACCACAGCAGAcgcaaacaaataatttaactcCTACAACATCTGCTACCGATTTGAGAGTCAACTCAGCGGCGGTAAACGTTGCCTTGTCGAGCGTGGCTAAATACTGGGTGTTTACAAATTTGTTTCCTGGCCCACTGCCTCAAGTTTCTGTCTACGGATTACCTACTGGTGCAAGAATTGAAAATGGGAAACCTATACAGgAACTTGGTCAAACtcatgcaaatattttaaatggagaTCCTAACATTATATTAGGACATGCTGGACAACCTCAAGTTACAGTTTCAGCTGCAGGTCAACAAATACCTGTCTCACAAATTATTGCAAATCAAGCAACACAGGGACATGACACTCTGGTGGGACATACACAGCAGCAAGAGCAAGCAAGCAGCAGCGCCCCACTGGCAGTGGCTCAAACCCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCAAGTGGGTCATCACTCACAGCAGCATATCATGCAACAGCAGCTGATGGCGGCGCGTCCCGAACACGCTAACCAACAGATCCAGCTGACAGTTAGTGAGGATGGCATAGTGACTGTAGTGGAGCCCGGTGGTGGGAAGCTCGTAGAGAAAGAGGAGCTACATGAGACTATCAAGATGCCTACGGACCACACGCTCACAGTGCACCAGCTGCAACAGATTGTTGGACATCATCAGGTTATAGACAGCGTAGTACGCATTGAGCAAGCGACAGGTGAACCCGCCAATATTTTGGTGACGCAAAACCCAGATGGCACCACTTCCATAGAAACTAGCGCCGCTGATCCGTTACTAGTGAAAGACGAGAAGAATGTCGCTAAAATTGAATCCGCCCAATTTGCTATACCTGCAGAAATTAAAGACATTAAAGGAATTGATTTGAAgAGTGTTGGAGCTATGGGCATGGAAGGAGCAGTTGTCAAGATTTCAGCAGCAACTGAACATGATTTGCAGCATGCTATGTATAAAGTAAATGTAGAAGATCTCTCACAGCTTTTAGCTTATCATGAAGTATTTGGAAAACTTAATACTGAGAATCAACAACAAGCTAAGGTAATAAGCGAAGTGGAAGTGGAGGCCGGCACTAGCGCAGCCATGTCGGAGGCGGAGTCGTCTCCCGGACACCACTCCTGCGACATTTGCGGGAAGATTTTCCAATTCCGATATCAACTTATTGTTCATAGacGCTACCATGGAGAGAGCAAGCCATTTACATGTCAAGTTTGTGGCTCTGCCTTCGCTAATCCAGTGGAATTATCGAAACATGGAAAGTGTCACTTGGCCGGTGATCCTGCCGAGCGTCAAGCTAAAAGACTCGCACAAGACAAGCCCTATGCCTGCTCCACTTGCCATAAAACATTCTCACGGAAGGAGCACCTCGACAACCATGTACGGAGTCACACAGGAGAAACTCCTTATAGATGTCAATTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACGCCGCATCGCTGCGAGATATGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCATACTGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCACATACGAATGACACGCCGTTCAGATGCGATCTATGCGGCAAGTCCTTCACGAGGAAGGAACACTTCACCAATCACATATTGTGGCACACGGGTGAGACACCACACCGATGTGATTTCTGCTCGAAAACGTTCACTCGCAAGGAGCACTTGCTGAACCACGTGCGCCAGCATACGGGCGAGTCGCCGCATCGCTGCAACTTCTGTGCGAAGTCGTTCACGAGACGAGAGCACCTCGTCAACCACGTGCGACAGCACACCGGCGAGACGCCCTTCCAGTGCGGATACTGTCCTAAGGCGTTCACTAGGAAAGACCATTTAGTAAATCACGTACGTCAACATACCGGAGAGTCCCCACATAAATGTACATTCTGTACGAAATCATTTACACGTAAAGAACATTTAACGAATCATGTGCGGCAACACACAGGGGAGTCCCCTCATCGGTGTACATACTGTTCTAAGTCTTTCACAAGAAAGGAACATCTTACAAACCATATAAGACAGCATACAGGGGAGACTCCCCACAAGTGCACGTATTGCCCGCGCGAGTTCTCGCGCAAGGACCACCTGCAGCAACACCTGCGGCAGCACACCGGCGACGCGCCGCACACCTGCTCCTACTGTAACAAGAGCTTCACCAGGAAAGAGCACCTCGTTACTCATGTGCGACAACATACCGGCGAAACGCCCTTCAAATGCACCTACTGCTCAAAATCGTTCTCACGTAAAGAGCACCTCACTAACCACGTGCATCTTCACACTGGAGAAACACCGCATAAGTGTCCATTCTGTACCAAGACTTTCTCTAGGAAGGAACATTTAACTAATCATGTCAGGATACATACAGGCGAGTCACCACATAGATGCGagttttgtaataaaacattCACAAGAAAGGAACATCTAACCAATCACTTGAAGCAGCACACGGGCGACACGCCGCATGCTTGCAAAGTTTGCTCTAAACCGTTCACGAGGAAAGAGCATCTAGTTACGCATATgagGTCACACAGTTGTGGTGAGAGACCACATATTTGTGGCGAATGTGGCAAATCCTTCCCTCTTAAAGGAAATCTGCTGTTCCATGAGAGGTCACATAATAAAGGTGCTAATGCAACAAACAAAACCTTCCGTTGTGATGTTTGCTCCAAGGAGTTTATGTGCAAAAGTAATTTATCATCACATCGGAGAACACACACGGAAACTGGTGAAGGTACTACGAACACAGAACCTACTCCTGAAAATGAAGACTGTGGGGACTGCACTAAGTGTGAAAAAGAGTCACCTGAAAGACCTGAGAGGAAACATGATACAAGagcaTCATCAGAAAGCAGAGCAACTGAAGCAACTGCTGCACAAAATCCGTCACCAAATCCAAACCCTACCGTCATGCAAATCACTAGCCAGCAAGTCCGAGCCGGCCCTACAACGAGTGCGACGAGCGTAGCAACTGGCACGTTCACTCATACTGCCACCACACAACACCACGCCTCTACTAGCATAGCTCATCATCCGATCACGGTCAACTACTAA
Protein Sequence
MNPDHHNINTGGGQPPGNSESQNQRVQSTQQPQQTQTNNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPTGARIENGKPIQELGQTHANILNGDPNIILGHAGQPQVTVSAAGQQIPVSQIIANQATQGHDTLVGHTQQQEQASSSAPLAVAQTQQVPNNRVEFVQHHNIDMVNQVGHHSQQHIMQQQLMAARPEHANQQIQLTVSEDGIVTVVEPGGGKLVEKEELHETIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLLVKDEKNVAKIESAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAATEHDLQHAMYKVNVEDLSQLLAYHEVFGKLNTENQQQAKVISEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCTYCSKSFTRKEHLTNHIRQHTGETPHKCTYCPREFSRKDHLQQHLRQHTGDAPHTCSYCNKSFTRKEHLVTHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLVTHMRSHSCGERPHICGECGKSFPLKGNLLFHERSHNKGANATNKTFRCDVCSKEFMCKSNLSSHRRTHTETGEGTTNTEPTPENEDCGDCTKCEKESPERPERKHDTRASSESRATEATAAQNPSPNPNPTVMQITSQQVRAGPTTSATSVATGTFTHTATTQHHASTSIAHHPITVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01157022;
90% Identity
iTF_00778166;
80% Identity
-