Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:1825883-1841910[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 5.5e-05 0.0028 17.5 2.2 1 23 424 446 424 446 0.97

2 20 0.00064 0.033 14.1 0.7 1 20 452 471 452 474 0.94

3 20 1.4e-05 0.00074 19.3 4.4 1 23 493 515 493 515 0.98

4 20 0.00013 0.0066 16.3 4.7 1 23 521 543 521 543 0.99

5 20 2.5e-05 0.0013 18.5 5.3 1 23 549 571 549 571 0.97

6 20 0.00078 0.04 13.8 10.1 1 23 577 599 577 599 0.97

7 20 6.6e-07 3.4e-05 23.5 2.7 1 23 605 627 605 627 0.97

8 20 6.9e-05 0.0036 17.1 6.7 1 23 633 655 633 655 0.97

9 20 0.00023 0.012 15.5 5.5 1 23 661 683 661 683 0.97

10 20 3.3e-07 1.7e-05 24.4 1.9 1 23 689 711 689 711 0.98

11 20 8.2e-06 0.00042 20.1 7.9 1 23 717 739 717 739 0.98

12 20 3.4e-05 0.0018 18.1 6.3 1 23 745 767 745 767 0.98

13 20 1.6e-05 0.00086 19.1 6.6 1 23 773 795 773 795 0.98

14 20 6.6e-06 0.00034 20.3 4.9 1 23 801 823 801 823 0.97

15 20 6.1e-05 0.0032 17.3 7.2 1 23 829 851 829 851 0.97

16 20 8.3e-06 0.00043 20.0 5.8 1 23 857 879 857 879 0.98

17 20 1.8e-06 9.1e-05 22.2 6.1 1 23 885 907 885 907 0.97

18 20 3.5e-06 0.00018 21.2 3.7 1 23 913 935 913 935 0.96

19 20 0.00037 0.019 14.8 0.3 1 23 942 964 942 964 0.96

20 20 0.0017 0.087 12.8 4.5 1 23 973 995 973 995 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	5.5e-05	0.0028	17.5	2.2	1	23	424	446	424	446	0.97
2	20	0.00064	0.033	14.1	0.7	1	20	452	471	452	474	0.94
3	20	1.4e-05	0.00074	19.3	4.4	1	23	493	515	493	515	0.98
4	20	0.00013	0.0066	16.3	4.7	1	23	521	543	521	543	0.99
5	20	2.5e-05	0.0013	18.5	5.3	1	23	549	571	549	571	0.97
6	20	0.00078	0.04	13.8	10.1	1	23	577	599	577	599	0.97
7	20	6.6e-07	3.4e-05	23.5	2.7	1	23	605	627	605	627	0.97
8	20	6.9e-05	0.0036	17.1	6.7	1	23	633	655	633	655	0.97
9	20	0.00023	0.012	15.5	5.5	1	23	661	683	661	683	0.97
10	20	3.3e-07	1.7e-05	24.4	1.9	1	23	689	711	689	711	0.98
11	20	8.2e-06	0.00042	20.1	7.9	1	23	717	739	717	739	0.98
12	20	3.4e-05	0.0018	18.1	6.3	1	23	745	767	745	767	0.98
13	20	1.6e-05	0.00086	19.1	6.6	1	23	773	795	773	795	0.98
14	20	6.6e-06	0.00034	20.3	4.9	1	23	801	823	801	823	0.97
15	20	6.1e-05	0.0032	17.3	7.2	1	23	829	851	829	851	0.97
16	20	8.3e-06	0.00043	20.0	5.8	1	23	857	879	857	879	0.98
17	20	1.8e-06	9.1e-05	22.2	6.1	1	23	885	907	885	907	0.97
18	20	3.5e-06	0.00018	21.2	3.7	1	23	913	935	913	935	0.96
19	20	0.00037	0.019	14.8	0.3	1	23	942	964	942	964	0.96
20	20	0.0017	0.087	12.8	4.5	1	23	973	995	973	995	0.99

Sequence Information

Coding Sequence: ATGAATACAGAACATCACAGTATCAATACGGGTGGTGGCCAACCTCCTGGTAACTCAGAGTCTCAAAATCAACGAGTTTCATCTTCTCAGCAACAACAATCAAACAATAATCTGCCTCCCACTACTTCTGCTACCGACCTACGAGTTAATTCGGCAGCTGTTAACGTTGCTTTGTCCAGTGTCGCTAAGTATTGGGTGTTTACAAATCTTTTTCCCGGGCCAATACCTCAAGTTTCCGTGTATGGACTCCCACCTAATGCAAGACTTGAAAATGGAAAACCTGTGCAGGAACTAGGCCAAGCCCACACAGGACTTCTGAATGGTGATCCTAACCTTATACTCGGTCAGCACGGAGGGCAACCACTATCGGTATCAGGACCAAGTGGTCAACAAATACCCGTCACTCAAATTATTGCAACACAGTTGCAATCCGGACAGTCGCATGAATCATTGGGGGCGCATGGTCAGCAGCAAGATCACAGCCAGCAGAACCCTGGCAACACAAGCCAAGGTTCGGTTAGCACGAGTCAGCCCTCGCACCAGCAGGTACCCAATAACCGGGTCGACTTTATACAACACCATAACACTGATATGGGTCATCATTCCCAACAACATTCAATGCAACAACAACAGCTGATGTCTACCAATCGGGACCACACAAATCAACAGATACAGCTAACGGTGAGTGAAGATGGCATTGTGACTGTGGTGGAACCGGGCGGAGGCAAGGTTGTGGACAAAGAGGAGATGCATGACGCCATCAAGATGCCAACAGATCATACCCTGACTGTTCATCAGCTGCAACAGATTGTTGGACATCATCAGGTGATAGACAGCGTTGTTCGTATAGAACAAGCAACAGGCGAACCCGCTAATATACTTGTGACACAAAACCCTGATGGGACCACATCTATAGAGACCAGCGCATCTGAACAGCTTATAGTGAAAGATGAGAAAAATGTTGCAAAAATTGAATCTTCACAATTTGCAATACCCACAGATATTAAGGACATCAAGGGGCTTGACTTAAAGAATGTGGGAACAATGGGTATGGAGGGAGCGGTTGTGAAAATTTCAGCGGGCGCTTCAGAACACGACTTGCATGCAATGTATAAAGTTAATGTTGAGGACCTCTCTCATCTGTTGGCTTACCATGAAGTTTTTGGTAAACTCAATCCCGAGGGGCAACCACAACCCAAGCCTATAAATGAAGTGGATGAAGCGGGAACAAGTGCTGCCATTGCTGAATCTGATACTTCGCCCGGACACCACTCCTGTGATATCTGTGGGAAGATATTCCAGTTCCGCTACCAACTTATTGTACACAGaCGATACCACGGCGAGAGCAAACCTTACACATGTCAAGTTTGTGGCACCGCATTCGCTAATGCCATGGAACTTTCCAGACACGGAAAATGTCATCTtgCCGGAGACCCCTCAGAGAGACAAACCAAACGGTTGACTCAAGACAAGCCATATGCCTGCACAACTTGCCACAAAGCGTTCTCACGTAAGGAGCACTTGGACAATCATGTCCGAAGCCACACTGGAGAAACGCCTTACAGatGTCAGTTCTGCGCGAAGACGTTCACTCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACGCCGCATCATTGTCACATATGTTTGAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGACACACCGTTCCGATGTGAGTTGTGTGGCAAGTCCTTCACCAGAAAGGAACACTACACCAATCACATTCTCTGGCATACTGGGGAAACACCGCATCGTTGCGACTTCTGTTCGAAAACGTTCACCCGCAAGGAGCACCTGTTGAACCACGTGAGGCAACACACGGGCGAGTCGCCGCACCGCTGCAGTTTCTGCGCCAAGTCCTTCACACGCCGCGAACACCTCGTCAACCACGTGCGACAGCACACTGGCGAGACGCCATTCCAGTGCGGGTACTGCCCTAAGGCGTTCACCAGGAAAGATCATTTAGTGAACCACGTGCGTCAGCACACCGGGGAGTCCCCGCACAAGTGCTCCTACTGCACGAAGACGTTCACTCGCAAGGAGCATCTCACCAACCACGTGCGGCAACACACGGGCGAGTCGCCGCACCGTTGCACCTACTGCGCCAAGTCCTTCACGCGCAAGGAGCACCTCGCCAACCACACCAGACAGCATACGGGCGAAACTCCTCACAAGTGCACGTACTGCACGCGGTCGTTCGCGCGCAAGGAGCACCTCACGAACCACGTGCGCCAGCACACCGGCGACATGCCGCATCCCTGCTCCTACTGCAACAAGCGGTTCACGCGCAAGGAGCACCTCGTCAACCACGTGCGACTGCATACGGGCGAGACTCCGTTCAAGTGCACGTATTGCACGAAGGAGTTCTCCCGCAAGGAGCACCTCACCAACCACGTGCACCAGCACACCGGGGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACCTACTCCCGCAAGGAGCATTTGACCAACCACGTCAGAATCCACACGGGCGAGTCGCCGCACCGCTGCGAGTACTGCGACAAGACGTTCACGCGCAAGGAGCATCTCATCAACCACCTGAAGCAGCACACGGGCGACACGCCACACGCCTGCAAGGTCTGCTCCAAGCCCTTCACCAGGAAGGAGCACCTCATGACGCATATGAGAGCACACAACTGCGGCGAGAGACCATACTCGTGCGGAGAGTGCGGCAAGTCGTTCCCGTTGAAAGGCAATCTGCTGTTCCACGAGCGGTCGCATCAGAAGGGCGGCGGAAACAGACCCTTCAGATGCGATATTTGCTCCAAGGACTTCATTTGTAAAGGTCACTTGGTGTCACACCAGCGCACGCACCAGACGGCGGGTGAGGCTGCGGCCGGTGAGCAGCAGCCCGCCGCGCCCGTCGCCCCCGACGCAGCCAAGGACGCCGCGGACCGTGCTGACCGCAAACACGACGTCAGAGCAACAACTAACGAAAACAGACCGACAGAAGAAGAGGTCGCCCAGAGTCAGCAAAATAATGCTGTTATGCAAATTACTAGCCAGGTCCGAGGCGGTACGAGCAGCGCGACCAGTGTGGCGACGTTTACGCACACGTCTAGCGCGCAGCACCACGCCGGCGGTGTCGCGCACCATCCCGTCACCGTCAACTACTAG
Protein Sequence: MNTEHHSINTGGGQPPGNSESQNQRVSSSQQQQSNNNLPPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPPNARLENGKPVQELGQAHTGLLNGDPNLILGQHGGQPLSVSGPSGQQIPVTQIIATQLQSGQSHESLGAHGQQQDHSQQNPGNTSQGSVSTSQPSHQQVPNNRVDFIQHHNTDMGHHSQQHSMQQQQLMSTNRDHTNQQIQLTVSEDGIVTVVEPGGGKVVDKEEMHDAIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSASEQLIVKDEKNVAKIESSQFAIPTDIKDIKGLDLKNVGTMGMEGAVVKISAGASEHDLHAMYKVNVEDLSHLLAYHEVFGKLNPEGQPQPKPINEVDEAGTSAAIAESDTSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGTAFANAMELSRHGKCHLAGDPSERQTKRLTQDKPYACTTCHKAFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCHICLKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKTFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLANHTRQHTGETPHKCTYCTRSFARKEHLTNHVRQHTGDMPHPCSYCNKRFTRKEHLVNHVRLHTGETPFKCTYCTKEFSRKEHLTNHVHQHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCEYCDKTFTRKEHLINHLKQHTGDTPHACKVCSKPFTRKEHLMTHMRAHNCGERPYSCGECGKSFPLKGNLLFHERSHQKGGGNRPFRCDICSKDFICKGHLVSHQRTHQTAGEAAAGEQQPAAPVAPDAAKDAADRADRKHDVRATTNENRPTEEEVAQSQQNNAVMQITSQVRGGTSSATSVATFTHTSSAQHHAGGVAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01157022;
90% Identity: iTF_01148985;
80% Identity: -