Basic Information

Insect: Heliconius nattereri
Gene Symbol: -
Assembly: GCA_013403645.1
Location: JAAIXI010000245.1:4223272-4237148[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.7e-05 0.0046 17.4 2.2 1 23 417 439 417 439 0.97

2 20 0.0049 0.33 11.6 0.7 1 20 445 464 445 467 0.94

3 20 1.8e-05 0.0013 19.2 5.4 1 23 486 508 486 508 0.98

4 20 0.00016 0.011 16.3 4.7 1 23 514 536 514 536 0.99

5 20 2.9e-05 0.002 18.6 5.3 1 23 542 564 542 564 0.97

6 20 9.5e-06 0.00065 20.1 7.3 1 23 570 592 570 592 0.97

7 20 6.2e-07 4.2e-05 23.8 2.9 1 23 598 620 598 620 0.97

8 20 8.5e-05 0.0058 17.1 6.7 1 23 626 648 626 648 0.97

9 20 0.00019 0.013 16.0 5.6 1 23 654 676 654 676 0.97

10 20 4.1e-07 2.8e-05 24.4 1.9 1 23 682 704 682 704 0.98

11 20 4e-05 0.0027 18.2 8.1 1 23 710 732 710 732 0.98

12 20 6.6e-06 0.00045 20.6 6.6 1 23 738 760 738 760 0.98

13 20 5.6e-06 0.00038 20.8 5.8 1 23 766 788 766 788 0.98

14 20 1.3e-05 0.00089 19.7 6.1 1 23 794 816 794 816 0.97

15 20 1.8e-05 0.0012 19.2 7.1 1 23 822 844 822 844 0.97

16 20 2.5e-06 0.00017 21.9 6.0 1 23 850 872 850 872 0.98

17 20 2.5e-05 0.0017 18.8 7.8 1 23 878 900 878 900 0.97

18 20 2.1e-06 0.00014 22.2 4.1 1 23 906 928 906 928 0.96

19 20 0.0018 0.12 12.9 0.6 1 23 935 957 935 957 0.95

20 20 0.002 0.14 12.8 4.0 1 23 968 990 968 990 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.7e-05	0.0046	17.4	2.2	1	23	417	439	417	439	0.97
2	20	0.0049	0.33	11.6	0.7	1	20	445	464	445	467	0.94
3	20	1.8e-05	0.0013	19.2	5.4	1	23	486	508	486	508	0.98
4	20	0.00016	0.011	16.3	4.7	1	23	514	536	514	536	0.99
5	20	2.9e-05	0.002	18.6	5.3	1	23	542	564	542	564	0.97
6	20	9.5e-06	0.00065	20.1	7.3	1	23	570	592	570	592	0.97
7	20	6.2e-07	4.2e-05	23.8	2.9	1	23	598	620	598	620	0.97
8	20	8.5e-05	0.0058	17.1	6.7	1	23	626	648	626	648	0.97
9	20	0.00019	0.013	16.0	5.6	1	23	654	676	654	676	0.97
10	20	4.1e-07	2.8e-05	24.4	1.9	1	23	682	704	682	704	0.98
11	20	4e-05	0.0027	18.2	8.1	1	23	710	732	710	732	0.98
12	20	6.6e-06	0.00045	20.6	6.6	1	23	738	760	738	760	0.98
13	20	5.6e-06	0.00038	20.8	5.8	1	23	766	788	766	788	0.98
14	20	1.3e-05	0.00089	19.7	6.1	1	23	794	816	794	816	0.97
15	20	1.8e-05	0.0012	19.2	7.1	1	23	822	844	822	844	0.97
16	20	2.5e-06	0.00017	21.9	6.0	1	23	850	872	850	872	0.98
17	20	2.5e-05	0.0017	18.8	7.8	1	23	878	900	878	900	0.97
18	20	2.1e-06	0.00014	22.2	4.1	1	23	906	928	906	928	0.96
19	20	0.0018	0.12	12.9	0.6	1	23	935	957	935	957	0.95
20	20	0.002	0.14	12.8	4.0	1	23	968	990	968	990	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCACCATAGTATTAATTCGGGTGGTGGCCAAGCTCCAGGCAATTCCGAGTCTCAGAACCAAAGGGTTCAGTCGACACAGCAACAGCAGCCGAcccaaacaaataatttaccaccTACAACATCTGCTACCGATTTAAGAGTCAACTCGGCGGCGGTAAACGTTGCCCTGTCGAGCGTGGCTAAATACTGGGTATTTACCAATTTGTTTCCCGGTCCATTGCCTCAAGTCTCTGTCTACGGTTTACCTACTGGTGCAAGACTTGAAAATGGGAAACCTGTACAGGATCTTGGTCAAGCACATGCAAGTATTTTGAATGGAGATCCTAACATTATATTAGGGCATGCTGGACAACCACAAGTCACGGTTTCGGCAGCAGGTCAACAATTACCTGTATCTCAAATTATTGCTAATCAAGCTACACAAGGACATGAGACTCTGGTGGGGCATACTCAGCAACAAGAAACAGCGACTAGCAGTGCTCCGTTGGCAGTTGCTCAAACCCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACGTCGATATGGTAAATCAAGTGGCTCATCACTCACAGCAGCAGCATATCATGCAGCAGCAGCTGATGGCAGCCGCGCGTCCCGAACACGCAAACCAGCAGATTCAGCTGACGGTAAGCGAGGATGGCATAGTAACAGTTGTGGAGCCCGGCGGCGGCGGGAAGCTTGTAGAGAAGGAAGAGCTTCATGAAGGTATCAAAATGCCTACAGACCACACTCTCACTGTGCACCAGTTGCAACAGATTGTGATCGATAGCGTCGTGCGCATAGAACAAGCGACGGGCGAACCTGCCAATATATTGGTGACGCAGAACCCGGACGGCACCACTTCTATAGAGACCAGCGCTGCCGACCCGCTCCTAGTGAAAGATGAGAAGAATGTCGCCAAAATTGAGTCTGCTCAATTTGCTATACCGGCGGAGATTAAGGATATTAAGGGAATAGATTTGAAgAGTGTTGGAGCTATGGGCATGGAGGGAGCAGTCGTTAAGATTTCAGCGGCATCTGAACACGATCTCCAACACGCCATGTATAAAGTGAATGTTGAAGATCTCTCGCAACTTCTGGCCTACCATGAAGTGTTTGGGAAACTTAATACTGAAAATCAACAACAGCCTAAGGTAATAACTGAAGTGGAAGTGGAGGCAGGCACCAGTGCCGCCATGTCGGAGGCGGAGTCGTCTCCAGGACACCACTCTTGCGACATATGCGGGAAGATATTCCAATTCCGATACCAACTTATTGTTCATAGaCGCTACCACGGAGAAAGCAAACCTTTTACGTGTCAAGTTTGTGGCTCCGCATTTGCTAATCCGGTGGAATTGTCAAAACATGGAAAATGTCACTTGGCTGGTGATCCTGCTGAACGTCAAGCAAAGAGACTGGCGCAGGATAAGCCCTACGCGTGTTCCACTTGCCACAAGACGTTCTCGCGTAAGGAGCACCTCGACAACCATGTCCGGAGTCATACTGGGGAAACACCATACAGATGTCAATTTTGCGCAAAAACATTCACTCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACCGGCGAGACGCCGCACCGCTGCGAGATATGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACtgGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTACACTAGGAAGGAGCATTTAGTGAATCATATGAGGTCTCATACGAATGACACGCCGTTCAGGTGCGATTTGTGCGGCAAGTCCTTCACCAGGAAGGAACACTTCACCAATCACATATTGTGGCACACCGGTGAAACTCCACATCGATGTGACTTCTGCTCTAAAACCTTCACTCGTAAAGAGCACCTGCTGAACCACGTGCGTCAACATACTGGGGAATCACCGCATCGATGCAATTTCTGTGCAAAGTCCTTCACAAGACGAGAACACTTAGTCAATCATGTGCGACAACACACTGGTGAAACGCCTTTCCAGTGCGGATACTGCCCTAAAGCGTTTACAAGGAAAGATCATTTAGTAAATCATGTTCGTCAACACACGGGAGAGTCCCCACATAAATGTACATTCTGTACGAAATCTTTTACACGTAAAGAGCATTTAACAAATCATGTGCGGCAACACACTGGGGAATCCCCACATCGATGTACATACTGCGCCAAGTCTTTCACTAGGAAGGAGCATCTTACAAATCATATAAGACAGCATACGGGCGAGACTCCCCACAAGTGCACGTATTGCCCGCGTGAGTTCTCGCGCAAGGACCACCTGCAGCAGCACGTGCGGCAGCACACTGGAGACGCACCGCATACATGCAGCTACTgcaataaaagttttactaGGAAAGAGCATCTTGTTACTCATGCCAGacaACATACGGGCGAAACACCATTTAAATGCACATACTGCTCGAAGTCGTTCTCGCGTAAGGAGCATCTCACGAACCATGTGCATCTTCACACTGGTGAAACACCGCATAAGTGTCCATTCTGTACTAAGACATTCTCTAGGAAAGAACACTTAACTAACCATGTcagAATACATACAGGTGAATCTCCACACAGATGCGAGTTCTGTAACAAAACATTCACAAGAAAGGAACATTTAACCAATCATTTGAAGCAGCACACAGGAGACACGCCGCATGCTTGTAAAATATGTTCCAAACCGTTCACCAGGAAAGAACATTTAGTAACACATATGAGATCCCACAGTTGTGGGGAGAGACCACACATTTGCGGTGAATGTGGAAAATCCTTTCCCTTGAAGGGTAATCTGCTGTTCCACGAGAGGTCACACAATAAAGGCGCCAATGCGTCAAACAAAACGTTCCGTTGTGACGTGTGCTCCAAGGAGTTTATGTGCAAAAGTAATTTAGTATCCCATCGAAGAACCCACACAGAAACAGGCGAGGGCACTACAACCACAGAGCCCACACCTGAAAATGAAGATTGTGGAGATTGCAACAAATGCGACAAAGACTCACCAGAAAGACCTGAAAGGAAACATGATACAAGAGCGTCATCAGAAAGCAGAGCTACTACAGAAGCAAATGCTGCACAAAATCCATCGCCAAATACGAACCCAACCGTCATGCAAATTAATAGCCAGCAAGTGCGAACGGGCCCTACAACGACCACCAGCGTAGCAACAGGCACATTCACCCACACCGCCACCACCCAACACCATGCCTCTAGCAGTATAGCCCACCACCCTGTTACTGTGAACTACTAG
Protein Sequence: MNPDHHSINSGGGQAPGNSESQNQRVQSTQQQQPTQTNNLPPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPTGARLENGKPVQDLGQAHASILNGDPNIILGHAGQPQVTVSAAGQQLPVSQIIANQATQGHETLVGHTQQQETATSSAPLAVAQTQQVPNNRVEFVQHHNVDMVNQVAHHSQQQHIMQQQLMAAARPEHANQQIQLTVSEDGIVTVVEPGGGGKLVEKEELHEGIKMPTDHTLTVHQLQQIVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLLVKDEKNVAKIESAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAASEHDLQHAMYKVNVEDLSQLLAYHEVFGKLNTENQQQPKVITEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPREFSRKDHLQQHVRQHTGDAPHTCSYCNKSFTRKEHLVTHARQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCNKTFTRKEHLTNHLKQHTGDTPHACKICSKPFTRKEHLVTHMRSHSCGERPHICGECGKSFPLKGNLLFHERSHNKGANASNKTFRCDVCSKEFMCKSNLVSHRRTHTETGEGTTTTEPTPENEDCGDCNKCDKDSPERPERKHDTRASSESRATTEANAAQNPSPNTNPTVMQINSQQVRTGPTTTTSVATGTFTHTATTQHHASSSIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01157022;
90% Identity: iTF_00778166;
80% Identity: -