Lchi003078.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Luehdorfia chinensis
Gene Symbol
-
Assembly
GCA_029286615.1
Location
JAGSMQ010000018.1:2463864-2497786[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 6.9e-05 0.0069 17.4 2.2 1 23 439 461 439 461 0.97
2 20 0.046 4.6 8.5 0.6 1 20 467 486 467 489 0.93
3 20 1.8e-05 0.0018 19.3 5.6 1 23 508 530 508 530 0.98
4 20 0.00016 0.016 16.3 4.7 1 23 536 558 536 558 0.99
5 20 3.2e-05 0.0032 18.5 5.3 1 23 564 586 564 586 0.97
6 20 9.8e-06 0.00099 20.1 7.3 1 23 592 614 592 614 0.97
7 20 8.3e-07 8.4e-05 23.5 2.7 1 23 620 642 620 642 0.97
8 20 8.8e-05 0.0088 17.1 6.7 1 23 648 670 648 670 0.97
9 20 0.00013 0.013 16.6 6.5 1 23 676 698 676 698 0.97
10 20 4.2e-07 4.2e-05 24.4 1.9 1 23 704 726 704 726 0.98
11 20 4.3e-05 0.0043 18.1 7.9 1 23 732 754 732 754 0.98
12 20 6.8e-06 0.00069 20.6 6.6 1 23 760 782 760 782 0.98
13 20 3.9e-06 0.00039 21.4 5.2 1 23 788 810 788 810 0.98
14 20 3.5e-05 0.0036 18.3 5.4 1 23 816 838 816 838 0.96
15 20 2.5e-05 0.0025 18.8 6.3 1 23 844 866 844 866 0.97
16 20 1e-05 0.0011 20.0 5.8 1 23 872 894 872 894 0.98
17 20 1.3e-05 0.0013 19.8 7.3 1 23 900 922 900 922 0.97
18 20 5.6e-06 0.00056 20.9 4.0 1 23 928 950 928 950 0.97
19 20 0.00047 0.047 14.8 0.3 1 23 957 979 957 979 0.96
20 20 4.4 4.5e+02 2.3 0.7 1 10 989 998 989 999 0.92

Sequence Information

Coding Sequence
ATGGCGGCCCGTCGCGTCCCCCGCGCCTCCATTTCGTTGACAGTCAGATATGACAATGCCGAGACGAAGAAATGTAAAAGTTGTTATGGTTTTTCACAGAATCAAAGAGTTTCGTCTGCTCAGCAACAGCAGCAGTCAGCCAATAATCTGACTCCTACAACATCTGCTACCGACCTGCGAGTTAACTCGGCAGCAGTAAATGTTGCTTTGTCAAGCGTCGCGAAATATTGGgtgtttacaaatttatttcccGGTCCAATACCACAAGTATCTGTATATGGTCTACCTACCAATACAAGAATTGAAAATGGGAAACCAGTGCAGGACCTTGGCCAGGCCCATGCAAGCTTGTTGAATGGTGATCCAAATATTATACTTGGTCAGCATGCTGGGCAAACACAATTATCAGTGTCGGGACCTAGTGGTCAACAAATACCCGTCACACAAATCATTGCAACACAATTGCAATCGGGCCAAACtcatgAATCATTGGTGGCCCACAATCAGCAACAAGACCTTGCTTCTCAGCAAGGCTCAGGAAATGGAACACAGGTGTCAGTTAGCTCAGGCCAGCCCTCTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTATACAACACCATAACATTGATATGGGACATCATTCACAACAACATTCTATGCAGCAACAGCTTATGGCAACCTCTCGCCCAGAACATGCTAATCAACAGattcagctgACAGTGAGTGAAGATGGCATTGTGACTGTAGTAGAGCCTGGTGGAGGTAAACTAGTAGATAAGGAAGAACTACATGAAGCCATCAAAATGCCTTCAGATCATACCCTGACTGTGCATCAGCTACAACAGATTGTTGGACACCATCAGGTAATCGACAGTGTTGTACGCATAGAGCAAGCTACAGGAGAACCAGCAAACATACTTGTTACTCAGAATCCTGATGGAACCACATCAATAGAGACTAGTGCTGCTGAACAACTTATAGTGaaagatgaaaaaaatgtaGCGAAAATTGAATCTGCTCAATTTGCAATACCTACAGACATAAAGGATATCAAGGGTATTGACTTAAAgAGTGTAGGAGCAATGGGCATGGAAGGAGCTGTGGTAAAGATTTCAGCTGGAGCCTCAGAACACGATCTCCATGCCATGTACAAAGTTAATGTGGAAGATCTTTCACAGCTGTTGGCATACCATGAAGTTTTTGGAAAACTAAATCCTGAAGGTCAACAACAGGCCAAGGTAATAAGTGAAGTGGAAGTAGAAGCAGGTACTAGCGCTGCCATATCAGAAACGGACTCCTCGCCCGGACATCATTCCTGCGACATTTGCGGGAAGATATTTCAGTTCCGTTACCAGCTTATTGTAcacagACGATACCATGGTGAGAGTAAACCGTACACGTGCCAAGTGTGTGGCTCGGCATTTGCAAACGGCGTTGAACTGTCGAGGCACGGAAAATGTCACCTAGCTGGCGACCCTGCAGAGAGGCAGGCTAAAAGGTTGACTCAAGATAAACCCTATGCATGCACAACTTGCCACAAAACATTCTCTCGCAAGGAGCATCTTGACAACCATGTTCGAAGCCACACTGGAGAAACTCCTTATAgGTGTCAATTCTGTGCGAAGACTTTCACACGTAAGGAGCATATGGTGAACCACGTTAGAAAGCATACAGGAGAGACACCACATCGTTGTGATATCTGCAAGAAAAGCTTTACCAGGAAAGAACACTTTATGAATCATGTCATGTGGCACACAGGTGAAACGCCGCATCATTGCCAAATATGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTCAACCATATGAGATCTCATACAAATGATACTCCATTCCGATGCGAATTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTACACCAATCACATACTGTGGCATACGGGTGAAACGCCGCATCGTTGCGACTTTTGTTCCAAAACGTTCACGCGCAAGGAGCACCTGCTGAACCACGTCCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCAGCTTTTGCTCCAAGTCCTTCACGAGGAGGGAACACCTTGTAAACCACGTGAGGCAGCACACCGGCGAGACTCCCTTTCAGTGTGGATACTGCCCTAAAGCGTTTACTCGGAAAGACCACTTAGTGAACCACGTTCGTCAACACACAGGGGAATCGCCTCATAAATGCTCGTTTTGTACGAAATCTTTCACACGCAAGGAACATTTGACGAATCACGTCCGTCAACATACGGGAGAGTCGCCTCATCGCTGTACTTATTGTGCAAAGTCTTTCACAAGGAAAGAACACCTCACTAACCATATCAGACAGCACACGGGCGAAACTCCACACAAGTGCACGTACTGCCCGCGCGCGTTCTCGCGCAAGGAGCACCTCAACAACCACGTGCGGCAGCACACCGGCGACACGCCGCACGCCTGCACCTTCTGCAACAAGAGCTTCACGCGCAAGGAGCACCTCGTCAACCACGTCCGGCAACACACTGGCGAGACTCCGTTCAAATGCACGTATTGTACAAAGGCGTTCTCGCGGAAAGAACATCTGACGAATCACGTACACCTTCACACCGGAGAGACTCCGCACAAATGTCCTTTCTGCACCAAAACATATTCAAGAAAGGAACATTTGACCAACCATGTCAGGATACACACCGGCGAATCGCCTCACCGCTGTGATTTCTGCGACAAGACCTTCACAAGAAAGGAGCACCTAACCAACCATTTGAAGCAGCATACTGGAGATACTCCGCATTCCTGCAAAGTCTGCTCTAAGCCTTTTACGAGAAAAGAGCACCTGGTAACACATATGAGaGCGCACAGTTGCGGTGAACGTCCTTACAGTTGTGGGGAATGTGGAAAATCATTCCCATTGAAAGGCAACTTGTTATTCCATGAACGATCGCATCAGAAGGGCGGCGGTGGCAATAGACCGTTCAGATGTGACGTGTGTTCGAAAGACTTCATTTGTAAAGGttgGGCATTTAGTATCACACCAGCGTACTCATGCTGCAACGGCGAGACTGTGCCAAACAATGAACAAGTAGCAGAAGGCGAGCAATGCGGCGATTGTGACAAGGATACTACTGAGCGGCCTGAACGGAAACACGATATCAGAGCGTCGAACGATAATAGGCCCACAGAAGAAGATGTCACACAAAACCAGCAAAGTAACCCTGTTATGCAAATAACTAGCCAACAAGTACGGTCTGGAGCAGCTGCAAGTGCGACCAATGTTACAACATTCACCCACACCCCGAGCCCGCAACACCATGCTGGCAATGCAATATCCCATCACCCTGTTACTGTAAACTACTAG
Protein Sequence
MAARRVPRASISLTVRYDNAETKKCKSCYGFSQNQRVSSAQQQQQSANNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTNTRIENGKPVQDLGQAHASLLNGDPNIILGQHAGQTQLSVSGPSGQQIPVTQIIATQLQSGQTHESLVAHNQQQDLASQQGSGNGTQVSVSSGQPSHQQVPNNRVEFIQHHNIDMGHHSQQHSMQQQLMATSRPEHANQQIQLTVSEDGIVTVVEPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAAEQLIVKDEKNVAKIESAQFAIPTDIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNPEGQQQAKVISEVEVEAGTSAAISETDSSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPYTCQVCGSAFANGVELSRHGKCHLAGDPAERQAKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLNNHVRQHTGDTPHACTFCNKSFTRKEHLVNHVRQHTGETPFKCTYCTKAFSRKEHLTNHVHLHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCDFCDKTFTRKEHLTNHLKQHTGDTPHSCKVCSKPFTRKEHLVTHMRAHSCGERPYSCGECGKSFPLKGNLLFHERSHQKGGGGNRPFRCDVCSKDFICKGWAFSITPAYSCCNGETVPNNEQVAEGEQCGDCDKDTTERPERKHDIRASNDNRPTEEDVTQNQQSNPVMQITSQQVRSGAAASATNVTTFTHTPSPQHHAGNAISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01157022;
90% Identity
iTF_00204511;
80% Identity
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