Cfun005053.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cecidostiba fungosa
Gene Symbol
-
Assembly
GCA_900474305.1
Location
UCOJ01000027.1:151519-159939[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 9.1e-05 0.0077 16.7 1.4 1 23 432 454 432 454 0.96
2 18 1.5e-05 0.0013 19.2 1.9 1 20 460 479 460 482 0.94
3 18 3e-05 0.0025 18.2 0.7 1 23 488 510 488 510 0.98
4 18 7.4e-05 0.0062 17.0 4.4 1 21 516 536 516 538 0.95
5 18 2.3e-05 0.0019 18.6 4.6 1 23 544 566 544 566 0.99
6 18 2.3e-05 0.0019 18.6 5.3 1 23 572 594 572 594 0.97
7 18 8.7e-06 0.00073 19.9 7.1 1 23 600 622 600 622 0.97
8 18 8.5e-08 7.1e-06 26.3 2.7 1 23 628 650 628 650 0.98
9 18 6.3e-05 0.0053 17.2 6.7 1 23 656 678 656 678 0.97
10 18 1.9e-05 0.0016 18.8 5.8 1 23 684 706 684 706 0.98
11 18 5.2e-07 4.3e-05 23.8 2.9 1 23 712 734 712 734 0.98
12 18 7.7e-06 0.00065 20.1 7.8 1 23 740 762 740 762 0.98
13 18 2.4e-05 0.002 18.5 9.1 1 23 768 790 768 790 0.98
14 18 3.2e-05 0.0027 18.2 7.5 1 23 796 818 796 818 0.98
15 18 0.00035 0.03 14.9 8.9 1 21 824 844 824 846 0.94
16 18 1.2e-05 0.00098 19.5 0.4 1 23 852 874 852 874 0.98
17 18 0.028 2.3 8.9 4.5 1 23 884 906 884 906 0.98
18 18 4.5e-07 3.8e-05 24.0 1.3 1 23 912 934 912 934 0.97

Sequence Information

Coding Sequence
atgAATAGCGAGCAGCATGCTCTGCCAGCGACGACGCAGGCGCAACAGGAGGATGTAAGTGCGGGTCAGAGTGGTCGTTCCTCATATCAAGGTGGTCTGGCAACTCCAACAAGCCTTGGCAATATAGGAAGCACTCCGCAATCATCAGCTGACCTGCGTGTAGGTACAGCTGTAGCATTAGCATCCTCAGTAGCTAAATACTGGGTCCTCACCAATCTCTTCCCAGGGCCGATACCTCAGGTATCGGTCTACCACCACCCTCACCACAGAGCTGGTGCAGTAGGTGGTGAAGTCCAGACCACTAAAGACTCAGCAGTATTGTTGAATCAGGATATGACACTGACTTCTGGTACTCATCACCAAACGTCAACTGCACAACAGCACCAGACAACAGTTAGTAGGAGTAGCCATCAAGGCTCCTTACAGACAACTACACAGattcctGTCTCTTTAACAGGACTCAGTCTTGATGGAAGCCACCTTCAAACAAGTGTAAGCCATTTGCAAGCAGCTCATGCACAGATGCAACAGCAGATACAATcccagcaacaacaacagcaagcTCAAttacatcagcagcaacaacagcaacaagtCCAGTCTCACCATCAAATACAGAGTCATCAGAATGCTCAAAATGTGGTGCAGAGTAATCAGAACTCATCAAgagatgataaaattaaagatgAATCATCCGAGCGTTGCAGCGACAACCAGGTACAATCCCACGCTCAGCACCAGCAGGCACAGGAATTACAGCAGACCCTAATGcaccagcagcaacatcaACAGCAGATGGGTGTTGGCATCGGCGCTGCTACCAATACTGATACTGCTAATCCTGGTGGAGTAGAAAAGGTtgagaagaaggaagagatACGCCATTTAAATATGACTCAatTTCAAGTTCCCGATCTAAAAACAGGAGGTCATATGATGGACGTCCGAACAGCAGATGGATCGATTGTTAAAATCAGCGCCGCGAGTGATCAAGACCTTGCCAAAACTTTGGGTGTTGATATATCACAGTATATCAATAAGGGAACCGTTAACGTCGAGGAACTAAATCAGATAAATCAACTACTGGCGTATCATGAAGTATTCGGCAAGCTACAAAGTGAGATTGCGGCAGGCACAACGCTGATTGGCAACACGGTGCCGACGCAGACAGTGACAACCATACAGAACGGCACACCGATTGTGCAGCAGGTACAGCTTAACAAATTCGACATAAAAACGAGCGATGGTGAAGCAACACCTGGACCTAGTGGCTCGCCGGTGTCTGTTGGCAGCCACGCCTGTGAGGTTTGTGGAAAGATCTTCCAGTTTCGGTATCAGCTTATCGTCCATCGTAGATACCACACGGAGAGAAAACCCTTCACTTGTCAGGTTTGCGGCAAGGCATTTACCACAGCGACCGATTTAACGCGTCATGGGAAATGCCACCTAGGTGGTTCCATGTTCACGTGTGCGGTTTGCTTTCATGTTTTCGCTAATGCCCCGTCACTCGAACGACACATGAAACGACACGCTACAGACAAACCGTACAATTGCACGGTATGCGGCAAAAGCTTTGCAAGGAAAGAACACCTCGATAACCATACAAGGTGTCACACGGGAGAGACTCCATACAGATGTCAGTACTGTGCAAAGACTTTTACACGTAAGGAGCACATGGTGAACCATGTGCGCAAGCACACCGGAGAGACGCCGCATCGGTGTGACATCTGCAAAAAGTCTTTCACGCGTAAGGAGCACTTCATGAATCACGTAATGTGGCACACAGGCGAGACACCTCATCACTGTCAGGTTTGCGGAAAGAAGTACACCCGTAAGGAGCACCTGGCTAATCATATGCGTTCGCACACCAACGATACTCCTTTCCGTTGTGAAATCTGTGGCAAGTCATTTACTCGCAAGGAGCACTTCACGAATCACATAATGTGGCACACGGGCGAGACACCGCACCGTTGCGATTTCTGCTCTAAGACGTTCACCAGAAAGGAGCACCTGCTCAATCACGTCCGGCAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCGTTCCGCTGCCAGTACTGTCCGAAAGCGTTCACACGCAAGGACCATCTAGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCGTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAGTCGCCGCACCGCTGCCACTTCTGCTCAAAGTCTTTCACCCGCAAGGAGCATCTGACGAATCATGTTCGCATCCACACCGGCGAATCCCCGCACAGGTGTGAATTCTGTCAGCGAACCTTCACCAGAAAGGAACATCTTAACAATCATCTCAGGCAGCACACCGGCGACTCATCGCACTGCTGTAACGTCTGCAACAAACCATTCACGCGCAAGGAGCACTTGATAAATCACATGCGCTGTCACACGGGCGAGCGTCCGTTCGTCTGTACGGAATGTGGCAAGAGTTTCCCGTTGAAAGGCAATTTACTTTTCCACATGCGCTCGCACAATAAGGGCAGTCAAGCGGAGCGTCCGTTTCGCTGCGACCTTTGCCCCAAGGATTTCATGTGCAAGGGTCACCTGGTTTCTCACAGACGTTCCCATTCAGATGAACGGCCTCACAGTTGTCCAGACTGCGGCAAGACCTTTGTCGAGAAAGGCAATATGCTCCGGCATCTTCGCAAGCATGCGGCTGAAGGTCCACCTACGCAGGTCAGCAGTGCAGCATCGGCCTTGACAGTTGGAGCCGCCGCGGCGGCAGTAGCAACAGCGAGTAGTCCAGCCGCGTTGTCGGTAATACCATCggcagcggctgcagcagcagctgcggtACTTGTAGGACATCCGCTGGCTCCACCACAGGCACCGCCGGCCGGCGTTGGGATACCCCAGCACACTGTCGTCGTACCCACACCGCCCGGAGTGCTCGCTTCGTACTGA
Protein Sequence
MNSEQHALPATTQAQQEDVSAGQSGRSSYQGGLATPTSLGNIGSTPQSSADLRVGTAVALASSVAKYWVLTNLFPGPIPQVSVYHHPHHRAGAVGGEVQTTKDSAVLLNQDMTLTSGTHHQTSTAQQHQTTVSRSSHQGSLQTTTQIPVSLTGLSLDGSHLQTSVSHLQAAHAQMQQQIQSQQQQQQAQLHQQQQQQQVQSHHQIQSHQNAQNVVQSNQNSSRDDKIKDESSERCSDNQVQSHAQHQQAQELQQTLMHQQQHQQQMGVGIGAATNTDTANPGGVEKVEKKEEIRHLNMTQFQVPDLKTGGHMMDVRTADGSIVKISAASDQDLAKTLGVDISQYINKGTVNVEELNQINQLLAYHEVFGKLQSEIAAGTTLIGNTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSGSPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTTATDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSSAASALTVGAAAAAVATASSPAALSVIPSAAAAAAAAVLVGHPLAPPQAPPAGVGIPQHTVVVPTPPGVLASY