Ppup017520.1
Basic Information
- Insect
- Pteromalus puparum
- Gene Symbol
- -
- Assembly
- GCA_012977825.2
- Location
- Scaffold:5197510-5204986[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6.9e-05 0.0064 16.9 1.4 1 23 377 399 377 399 0.96 2 17 1.1e-05 0.0011 19.3 1.9 1 20 405 424 405 427 0.94 3 17 2.3e-05 0.0021 18.4 0.7 1 23 433 455 433 455 0.98 4 17 5.6e-05 0.0052 17.1 3.5 1 21 461 481 461 483 0.94 5 17 1.7e-05 0.0016 18.8 4.6 1 23 489 511 489 511 0.99 6 17 1.7e-05 0.0016 18.8 5.3 1 23 517 539 517 539 0.97 7 17 6.6e-06 0.00062 20.1 7.1 1 23 545 567 545 567 0.97 8 17 6.4e-08 6e-06 26.4 2.7 1 23 573 595 573 595 0.98 9 17 4.7e-05 0.0044 17.4 6.7 1 23 601 623 601 623 0.97 10 17 1.5e-05 0.0014 19.0 5.8 1 23 629 651 629 651 0.98 11 17 3.9e-07 3.7e-05 23.9 2.9 1 23 657 679 657 679 0.98 12 17 1.8e-05 0.0017 18.7 9.1 1 23 685 707 685 707 0.98 13 17 2.4e-05 0.0022 18.3 7.5 1 23 713 735 713 735 0.98 14 17 0.00027 0.025 15.0 8.9 1 21 741 761 741 763 0.94 15 17 8.8e-06 0.00082 19.7 0.4 1 23 769 791 769 791 0.98 16 17 0.021 2 9.0 4.5 1 23 801 823 801 823 0.98 17 17 3.4e-07 3.2e-05 24.1 1.3 1 23 829 851 829 851 0.97
Sequence Information
- Coding Sequence
- ATGAATAGCGAGCAGCATGCTCTGCCAGCGACGACGCAGGGGCAACAAGAGGAAGTAAGCGCGGGTCAAAGTGGTCGTTCTTCATATCAAGGTGGTCTGGCAACTCCAACAAGCCTTGGCAATGTAGGAAGTAATCCGCAATCATCCGCTGACCTGCGTGTAGGTACAGCTGTAGCATTAGCATCCTCGGTAGCTAAATACTGGGTCCTCACCAATCTCTTTCCAGGACCGATACCTCAAGTATCGGTCTACCACCACCCTCACCACAGAGTTGGTGCAGCAGGTGGTGAAGTCCAGACCACCAAAGACTCAGCAATATTGTTGAACCAGGATATGGCACTGACCTCTGGTACTCATCATCAAACATCAACTGCACAACATCACCAAACAACAGTCAGTAGAAGTAGCCATCAAGGCTCCCTACAGACAACTACACAGATTCCTGTCTCTCTACCAGGACTCAGCCTTGATGGCAGCCACCTTCAAGCAAGTAATTCATCAAGAGATGATAAAATTAAAGACGAATCATCCGAGCGTTGCAACGACAACCAAGTACAATCCCACGTGCAACACCAGCAGGCACAGGAATTACAACAAACTCTAATGCATCAGCAGCAACATCAACAGCAGATCGGTGTCGGCATCGGCGCTGCTACCAACACTGATACTGGCAATCCTGGTATTGTGGATAAGGCGGAGAAGAAGGAAGAGATACGCCATTTAAATATGACTCAGTTCCAAGTTCCCGATATAAAGACAGGCGGTCACATGATGGACGTCCGAACAGCAGATGGATCGATTGTTAAAATCAGTGCCTCGAGTGATCAAGATCTTGCCAAAACTTTGGGTGTTGATATATCACAGTATATCAATAAGGGGGCCGTTAACGTCGAGGAACTAAACCAGATAAATCAACTACTGGCGTATCACGAAGTATTCGGAAAGCTTCAAAGTGAGATTGCGGCAGGCACGACTCTGATTGGCAGTACGGTGCCAACGCAAACGGTGACTACCATACAGAACGGTACACCTATTGCGCAACAGGTACAGCTTAATAAATTCGACGTAAAAACGAGTGATGGTGAAGCAACACCCGGACCCAGTGGATCACCGGTATCTGTAGGCAGCCACGCCTGTGAAGTTTGTGGCAAGATCTTCCAGTTTCGATATCAACTGATCGTCCATCGTAGATACCACACGGAGAGAAAACCCTTCACTTGCCAGGTTTGCGGCAAGGCATTTACTACAGCGACCGATTTGACGCGTCACGGAAAGTGCCACTTGGGTGGTTCTATGTTCACTTGTGCGGTCTGCTTTCATGTTTTCGCTAATGCCCCGTCACTAGAGCGACACATGAAACGACATGCTACGGACAAACCGTACAATTGCACGGTATGTGGCAAAAGCTTTGCCAGGAAAGAGCACCTTGATAACCATGCCAGGTGTCACACAGGAGAGACTCCATATAGATGTCAGTACTGTGCAAAGACTTTTACACGTAAGGAACACATGGTGAACCACGTGCGCAAGCATACCGGGGAGACGCCGCATAGGTGCGACATTTGCAAAAAGTCTTTCACGCGTAAAGAGCACTTCATGAATCACGTGATGTGGCACACCGGCGAGACACCTCATCACTGTCAGGTTTGCGGAAAGAAGTACACCCGCAAGGAGCACCTGGCTAATCATATGCGCTCGCACACCAACGATACTCCTTTCCGATGTGAAATTTGCGGCAAGTCATTTACTCGCAAGGAGCACTTCACGAATCACATAATGTGGCACACGGGCGAGACACCGCACCGTTGCGATTTCTGCTCTAAGACGTTCACCAGAAAGGAGCACCTGCTCAATCACGTCAGGCAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGAGAGACGCCGTTCCGCTGCCAATACTGTCCGAAAGCGTTCACGCGCAAGGACCACCTAGTGAACCACGTCAGGCAGCACACGGGCGAGTCGCCGCACCGCTGCCACTTCTGCTCAAAGTCTTTCACCCGCAAGGAGCATCTGACGAACCATGTCCGCATCCACACCGGTGAATCGCCGCACAGGTGTGAATTTTGTCAGCGAACCTTCACCAGAAAGGAACATTTAAACAATCATCTTAGGCAGCACACCGGCGACTCGTCGCACTGCTGTAATGTCTGCAACAAACCATTTACACGCAAGGAGCATCTGATAAATCATATGCGCTGTCACACAGGCGAGCGTCCATTTGTCTGTACGGAATGTGGAAAGAGTTTCCCGTTAAAAGGCAATTTACTTTTCCACATGCGCTCGCACAATAAAGGCAGTCAGGCGGAACGCCCGTTCCGCTGCGACCTCTGCCCCAAGGACTTTATGTGCAAGGGTCACCTGGTTTCTCACAGACGTTCCCATTCAGATGAACGGCCTCACAGTTGCCCGGACTGCGGCAAGACCTTCGTTGAAAAGGGCAACATGCTTCGGCATCTTCGAAAGCATGCGGCTGAAGGACCACCAACGCAAGTCAGCAGTGCAGCATCGGCTCTGACAGTTGGAGCCGCCGCGGCGGCGGCGGCAGCAGCAGCGAGTAGTCCGGCCGCGTTGTCGGTGATACCATCGGCAGCGGCTGCGGCGGCAGCTGCGGTACTCGTAGGACATCCACTGGCTCCTCCACAACAGGCGCCGCCGGCCGGCGTCGGAATACCTCAGCACACTGTCGTCGTACCCACACCACCCGGAGTGCTCGCTTCGTACTGA
- Protein Sequence
- MNSEQHALPATTQGQQEEVSAGQSGRSSYQGGLATPTSLGNVGSNPQSSADLRVGTAVALASSVAKYWVLTNLFPGPIPQVSVYHHPHHRVGAAGGEVQTTKDSAILLNQDMALTSGTHHQTSTAQHHQTTVSRSSHQGSLQTTTQIPVSLPGLSLDGSHLQASNSSRDDKIKDESSERCNDNQVQSHVQHQQAQELQQTLMHQQQHQQQIGVGIGAATNTDTGNPGIVDKAEKKEEIRHLNMTQFQVPDIKTGGHMMDVRTADGSIVKISASSDQDLAKTLGVDISQYINKGAVNVEELNQINQLLAYHEVFGKLQSEIAAGTTLIGSTVPTQTVTTIQNGTPIAQQVQLNKFDVKTSDGEATPGPSGSPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTTATDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHARCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLINHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSQAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSSAASALTVGAAAAAAAAAASSPAALSVIPSAAAAAAAAVLVGHPLAPPQQAPPAGVGIPQHTVVVPTPPGVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286639;
- 90% Identity
- -
- 80% Identity
- -